Gene omics information

Query gene ID PtpAffx.201115.1.S1_at
Gene name AP2/ERF domain-containing transcription factor
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4471.9PtpAffx.201115.1.S1_atpmrna2198AP2/ERF domain-containing transcription factor-9e-21At1g80580ethylene-responsive element-binding family proteinS.X.H.G.
0.1729.1PtpAffx.219558.1.S1_atpmrna35510hypothetical protein-4e+1At5g10890myosin heavy chain-relatedS.X.H.G.
0.046.9PtpAffx.217801.1.S1_atpmrna33209hypothetical protein-6e-1At5g54240unknown proteinS.X.H.G.
0.035.2PtpAffx.202993.1.S1_atpmrna5923hypothetical protein-3e-1At5g18180Gar1 RNA-binding region family proteinS.X.H.G.
0.035.2PtpAffx.217967.1.S1_atpmrna33452hypothetical protein-7e+0At5g14410unknown proteinS.X.H.G.
0.000.4PtpAffx.224689.1.S1_atpmrna43491hypothetical protein-5e-4At4g16070lipase class 3 family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.999.9GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
13.399.4GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
10.499.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
5.196.8GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.393.7GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.193.2GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.590.9GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue series
2.389.8GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
1.987.2GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.723e-117422PtpAffx.213831.1.S1_atpmrna26990AP2/ERF domain-containing transcription factor-5e-13At1g80580ethylene-responsive element-binding family proteinC.G.S.X.
0.044e-550PtpAffx.21486.1.S1_x_atCV244661--2e-11At1g78080RAP2.4 (related to AP2 4)C.G.S.X.
0.054e-550PtpAffx.202247.1.S1_atpmrna4503AP2/ERF domain-containing transcription factor-1e-3At5g61890AP2 domain-containing transcription factor family proteinC.G.S.X.
0.041e-242PtpAffx.211594.1.S1_atpmrna22717AP2/ERF domain-containing transcription factor-7e-2At4g17500ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)C.G.S.X.
0.034e-240PtpAffx.81893.1.A1_atCV268920AP2/ERF domain-containing transcription factor-2e-6At3g23240ERF1 (ETHYLENE RESPONSE FACTOR 1)C.G.S.X.
0.044e-240PtpAffx.21486.2.S1_a_atCV254073--8e-27At4g39780AP2 domain-containing transcription factor, putativeC.G.S.X.
0.064e-240PtpAffx.153211.1.A1_atCV266086AP2/ERF domain-containing transcription factor-3e-4At3g23220DNA binding / transcription factorC.G.S.X.
0.032e-138PtpAffx.31347.1.A1_atCV239271AP2/ERF domain-containing transcription factor-4e-8At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)C.G.S.X.
0.032e-138PtpAffx.209271.1.S1_atpmrna18315AP2/ERF domain-containing transcription factor-2e-16At2g40220ABI4 (ABA INSENSITIVE 4)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.139e-21101Arabidopsis thalianaAt1g80580844397ethylene-responsive element-binding family proteinencodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.---C.G.S.X.
0.061e-861Glycine maxGma.6380.1.S1_atCD405339Ethylene-responsive element binding factor 4-4e-8At5g44210ERF9 (ERF DOMAIN PROTEIN 9)C.G.S.X.
0.041e-240Hordeum vulgareContig8984_atContig8984--2e+0At2g05520GRP-3 (GLYCINE-RICH PROTEIN 3)C.G.S.X.
0.051e-346Oryza sativaOsAffx.29664.1.S1_at---0C.G.S.X.
0.033e-240Triticum aestivumTa.26980.1.A1_atCD453934--3e-2At1g22190AP2 domain-containing transcription factor, putativeC.G.S.X.
0.055e-444Vitis vinifera1616198_atCF405950hypothetical protein LOC100242144-1e-7At1g28370ERF11 (ERF DOMAIN PROTEIN 11)C.G.S.X.
0.038e-134Zea maysZm.15276.1.A1_atBM379849--3e-3At1g12665-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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