CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.200852.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.200852.1.S1_at pmrna1653 hypothetical protein - 2e-3 At1g30370 lipase class 3 family protein S.X. H.G.
0.80 96.0 PtpAffx.86948.1.S1_s_at DN483659 hypothetical protein - 7e-2 At3g05980 unknown protein S.X. H.G.
0.71 92.6 PtpAffx.86948.1.S1_at DN483659 - - 7e-2 At3g05980 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.69940.1.A1_at CV238070 - - 7e+0 At5g11080 ubiquitin family protein S.X. H.G.
0.67 91.1 PtpAffx.142992.1.S1_s_at CA823082 glycosyltransferase, CAZy family GT8 - 3e-4 At1g70090 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) S.X. H.G.
0.55 82.2 PtpAffx.85220.1.S1_at DN488269 hypothetical protein - 7e+0 Atmg00120 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.0 100.0 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.8 99.1 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.88 0 1308 PtpAffx.204851.1.S1_at pmrna9585 hypothetical protein - 1e-5 At1g30370 lipase class 3 family protein C.G. S.X.
0.01 2e-1 38 PtpAffx.204445.1.S1_at pmrna8722 - - 3e-8 At3g43610 tubulin binding C.G. S.X.
0.01 8e-1 36 PtpAffx.1258.4.S1_s_at CF232778 actin 1 /// actin 9 - 0 At5g09810 ACT7 (ACTIN 7) C.G. S.X.
0.01 3e+0 34 PtpAffx.8880.1.S1_at CV278627 hypothetical protein - 3e-31 At3g10410 scpl49 (serine carboxypeptidase-like 49) C.G. S.X.
0.01 3e+0 34 PtpAffx.217035.1.S1_at pmrna32151 hypothetical protein - 1e-7 At1g72390 unknown protein C.G. S.X.
0.01 3e+0 34 PtpAffx.217035.1.S1_x_at pmrna32151 hypothetical protein - 1e-7 At1g72390 unknown protein C.G. S.X.
0.01 3e+0 34 PtpAffx.217035.1.S1_s_at pmrna32151 hypothetical protein - 1e-7 At1g72390 unknown protein C.G. S.X.
0.01 3e+0 34 PtpAffx.213982.1.S1_at pmrna27246 hypothetical protein - 8e-1 At2g14247 Expressed protein C.G. S.X.
0.01 3e+0 34 PtpAffx.208803.1.S1_at pmrna17453 hypothetical protein - 1e-23 At2g02820 MYB88 (myb domain protein 88) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-3 44 Arabidopsis thaliana At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV - - - C.G. S.X.
0.02 8e-1 36 Glycine max PsAffx.C93000028_at PsAffx.C93000028 - - 1e+0 At1g28327 - C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig8526_at Contig8526 - - 5e-1 At5g14430 dehydration-responsive protein-related C.G. S.X.
0.02 4e+0 34 Oryza sativa Os05g0349400 AK107832.1 - Hypothetical protein 4e+0 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.103048.1.S1_at CA600471 - - 7e-2 At3g03950 protein binding C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1619816_at CA817914 hypothetical protein LOC100250681 - 2e-11 At1g75350 emb2184 (embryo defective 2184) C.G. S.X.
0.02 2e-1 36 Zea mays Zm.17675.1.S1_at CK369796 - - 1e+1 At3g27250 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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