Gene omics information

Query gene ID	PtpAffx.200833.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	71.9	PtpAffx.200833.1.S1_x_at	pmrna1624	hypothetical protein	-	1e-3	At1g26250	proline-rich extensin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.249.414.S1_at	CV265609	-	-	5e-1	At1g22700	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.110114.1.A1_at	CK091163	-	-	6e-3	At3g05760	nucleic acid binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.40862.1.S1_at	BU834664	-	-	7e-2	At1g27300	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.80529.1.A1_at	BP936518	-	-	1e-3	At5g18190	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.203651.1.S1_at	pmrna7242	hypothetical protein	-	1e+1	At5g08480	VQ motif-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.209579.1.S1_at	pmrna18958	hypothetical protein	-	2e-1	At3g52150	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	99.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.7	98.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2	96.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	5e-34	145	PtpAffx.200832.1.S1_x_at	pmrna1623	-	-	2e-3	At4g08370	proline-rich extensin-like family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	2e-11	69	PtpAffx.202514.1.S1_at	pmrna5033	-	-	6e-3	At2g43150	proline-rich extensin-like family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	9e-11	67	Ptp.2149.1.S1_at	CK089576	hypothetical protein	-	2e-3	At2g43150	proline-rich extensin-like family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	1e-9	63	PtpAffx.224886.1.S1_x_at	pmrna43793	hypothetical protein	-	2e-6	At1g26240	proline-rich extensin-like family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	5e-9	61	PtpAffx.132698.2.S1_at	CX655024	-	-	3e-4	At2g24980	proline-rich extensin-like family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	3e-7	56	PtpAffx.224324.1.S1_x_at	pmrna42773	hypothetical protein	-	8e-5	At1g26240	proline-rich extensin-like family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	5e-6	52	PtpAffx.222757.1.S1_x_at	pmrna40391	hypothetical protein	-	2e+0	At1g14600	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	5e-6	52	PtpAffx.222757.1.S1_at	pmrna40391	hypothetical protein	-	2e+0	At1g14600	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-4	46	PtpAffx.219987.1.S1_at	pmrna36201	hypothetical protein	-	6e-5	At4g16790	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-3	44	Arabidopsis thaliana	At1g26250	839166	proline-rich extensin, putative	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	9e-11	67	Glycine max	GmaAffx.90800.1.S1_x_at	CF806525	-	-	2e-2	At5g06630	proline-rich extensin-like family protein	C.G.	S.X.	Please select
0.08	4e-1	34	Hordeum vulgare	Contig14167_at	Contig14167	-	-	2e-3	At3g14480	glycine/proline-rich protein	C.G.	S.X.	Please select
0.04	3e-2	40	Oryza sativa	Os06g0521825	9634.m03098	-	-	8e-2	At5g65609	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-2	40	Triticum aestivum	TaAffx.29842.1.S1_at	CA634285	-	-	2e-2	At2g37035	unknown protein	C.G.	S.X.	Please select
0.15	7e-2	36	Vitis vinifera	1619942_at	CF568925	-	-	3e+0	At3g57370	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.1530.1.S1_at	BM080103	nucleus protein	-	6e+0	At5g48860	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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