Gene omics information

Query gene ID PtpAffx.200696.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9399.5PtpAffx.200696.1.S1_atpmrna1345hypothetical protein-8e-139At3g44200NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")S.X.H.G.
0.3863.7PtpAffx.215433.1.S1_s_atpmrna29618hypothetical protein-2e+0At1g36980unknown proteinS.X.H.G.
0.3357.5PtpAffx.207723.1.S1_s_atpmrna15345hypothetical protein-8e-76At2g39750dehydration-responsive family proteinS.X.H.G.
0.1626.9PtpAffx.11619.1.S1_atCV235173--3e-33At4g25680unknown proteinS.X.H.G.
0.1525.3PtpAffx.24898.1.A1_atCV242273hypothetical protein-2e-1Atmg01050-S.X.H.G.
0.0711.6PtpAffx.68666.2.S1_atCV254643hypothetical protein-6e-4At5g17550PEX19-2S.X.H.G.
0.069.8PtpAffx.211268.1.S1_s_atpmrna22106hypothetical protein-5e-66At3g54190-S.X.H.G.
0.046.9PtpAffx.211268.1.S1_atpmrna22106hypothetical protein-5e-66At3g54190-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.898.4GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue series
5.797.3GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
5.196.8GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
4.696.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.495.9GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.293.5GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.193.2GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.590.9GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.590.9GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue series
2.389.8GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.7601540PtpAffx.205021.1.S1_atpmrna9940hypothetical protein-3e-148At3g44200NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")C.G.S.X.
0.112e-60234PtpAffx.28023.1.S1_atCV274907hypothetical protein-1e-2At3g44200NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")C.G.S.X.
0.149e-47188PtpAffx.56562.1.A1_atCV230258hypothetical protein-5e+0At5g23090NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)C.G.S.X.
0.143e-1687PtpAffx.86377.1.S1_atCX174012hypothetical protein-3e-20At3g20860ATNEK5 (NIMA-RELATED KINASE5)C.G.S.X.
0.112e-1377PtpAffx.221522.1.S1_x_atpmrna38449hypothetical protein-3e-11At3g20860ATNEK5 (NIMA-RELATED KINASE5)C.G.S.X.
0.052e-1377PtpAffx.15900.1.S1_s_atCV245069hypothetical protein-3e-13At3g20860ATNEK5 (NIMA-RELATED KINASE5)C.G.S.X.
0.099e-1375PtpAffx.209759.1.S1_x_atpmrna19256hypothetical protein-1e-13At3g20860ATNEK5 (NIMA-RELATED KINASE5)C.G.S.X.
0.236e-1169PtpAffx.104679.1.S1_atBU888604hypothetical protein-8e-8At3g20860ATNEK5 (NIMA-RELATED KINASE5)C.G.S.X.
0.025e-240PtpAffx.203258.1.S1_atpmrna6451hypothetical protein-1e-1At3g46930protein kinase family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.348e-139494Arabidopsis thalianaAt3g44200823542NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")Encodes AtNek5, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.Interacts physically with plant kinesins ARK1 and ARK2. Mutants show defects in root epidermal cell morphology, trichome branching and other epidermal cell abnormalities suggesting a rol e in epidermal cell differentiation. NEK6 co-localizes with cortical microtubules.---C.G.S.X.
0.102e-1791Glycine maxGmaAffx.30480.1.S1_atBQ474065--2e+0At5g26800unknown proteinC.G.S.X.
0.111e-1273Hordeum vulgareContig25849_atContig25849--3e-1At1g51110plastid-lipid associated protein PAP / fibrillin family proteinC.G.S.X.
0.279e-54212Oryza sativaOs05g0440800AK073901.1-Protein kinase domain containing protein5e-53At3g44200NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")C.G.S.X.
0.121e-552Triticum aestivumTaAffx.98504.1.S1_atBG607257--4e-12At1g54510ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)C.G.S.X.
0.033e+032Vitis vinifera1621574_atCF511059hypothetical protein LOC100241803-3e-2At5g28290ATNEK3 (NIMA-RELATED KINASE3)C.G.S.X.
0.251e-40167Zea maysZm.3687.1.A1_atAW042269--1e-28At3g44200NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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