Gene omics information

Query gene ID	PtpAffx.200604.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	93.6	PtpAffx.200604.1.S1_x_at	pmrna1188	hypothetical protein	-	3e-1	At1g10747	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.24779.1.A1_at	CV246012	hypothetical protein	-	2e+0	At4g12382	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.209581.1.S1_at	pmrna18961	hypothetical protein	-	8e-2	At4g36000	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.218655.1.S1_at	pmrna34351	hypothetical protein	-	2e+0	At5g58784	dehydrodolichyl diphosphate synthase	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.218451.1.S1_s_at	pmrna34073	hypothetical protein	-	2e+0	At5g66320	zinc finger (GATA type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.115134.1.A1_at	CV231651	-	-	4e+0	At5g48350	nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.8	99.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
16.8	99.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
8.2	98.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1136	PtpAffx.200604.1.S1_at	pmrna1188	hypothetical protein	-	3e-1	At1g10747	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.72	0	757	PtpAffx.224088.1.S1_s_at	pmrna42325	hypothetical protein	-	3e-1	At1g10747	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.47	2e-147	521	PtpAffx.205435.1.S1_at	pmrna10746	hypothetical protein	-	3e-3	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-11	69	PtpAffx.206492.1.S1_at	pmrna12881	hypothetical protein	-	8e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-7	57	PtpAffx.210433.1.S1_at	pmrna20486	hypothetical protein	-	3e-1	At3g56030	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	7e-6	52	PtpAffx.212608.1.S1_at	pmrna24686	hypothetical protein	-	5e-1	At3g23130	SUP (SUPERMAN)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	7e-6	52	PtpAffx.200636.1.S1_at	pmrna1237	hypothetical protein	-	8e-1	At3g27570	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	7e-6	52	PtpAffx.200636.1.S1_x_at	pmrna1237	hypothetical protein	-	8e-1	At3g27570	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	3e-5	50	PtpAffx.217324.1.S1_at	pmrna32538	hypothetical protein	-	4e+0	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At1g10747	5007680	-	Encodes a Maternally expressed gene (MEG) family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-1	38	Glycine max	GmaAffx.38430.1.S1_at	CA936241	-	-	6e-2	At5g18420	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HT01A09w_at	HT01A09w	-	-	5e+0	At4g31320	auxin-responsive protein, putative / small auxin up RNA (SAUR_C)	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os03g0428800	AK060233.1	-	TPR-like domain containing protein	2e-4	At3g26580	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-2	40	Triticum aestivum	TaAffx.103305.2.S1_at	CA625275	-	-	2e-2	At5g61590	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1609274_at	CF405813	-	-	3e+0	At4g08028	-	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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