Gene omics information

Query gene ID	PtpAffx.200586.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.200586.1.S1_s_at	pmrna1161	hypothetical protein	-	5e-46	At5g64550	loricrin-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.107372.1.S1_at	BP929145	hypothetical protein	-	3e-8	At2g22010	RKP (Related to KPC1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.210963.1.S1_at	pmrna21539	hypothetical protein	-	2e-26	At3g05090	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.201073.1.S1_at	pmrna2119	f-box family protein	-	3e+0	At5g37000	exostosin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.143760.1.S1_at	BU872292	hypothetical protein	-	4e-22	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.201293.1.S1_at	pmrna2565	hypothetical protein	-	2e-110	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.208255.1.S1_s_at	pmrna16431	hypothetical protein	-	8e-38	At1g13460	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	96.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	1396	Ptp.3553.1.S1_at	DN493158	hypothetical protein	-	8e-37	At5g09670	loricrin-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	0	882	PtpAffx.44439.1.S1_a_at	CV232219	hypothetical protein	-	3e-18	At5g09670	loricrin-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	3e-48	194	Ptp.7987.1.S1_at	DN503037	hypothetical protein	-	7e-1	At5g52130	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-22	109	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-22	109	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	4e-13	77	Ptp.6278.1.S1_s_at	DN490865	hypothetical protein	-	2e-34	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	4e-13	77	Ptp.6278.1.S1_at	DN490865	hypothetical protein	-	2e-34	At1g64140	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-2	40	PtpAffx.205298.1.S1_at	pmrna10507	hypothetical protein	-	4e-7	At2g17550	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	38	PtpAffx.224127.1.S1_s_at	pmrna42374	hypothetical protein	-	3e-1	At4g14380	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	5e-46	186	Arabidopsis thaliana	At5g64550	836576	loricrin-related	F:molecular_function unknown;P:unknown;C:unknown;MPOBFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	Gma.4046.2.S1_at	BU549243	-	-	2e+0	At1g45145	ATTRX5	C.G.	S.X.	Please select
0.16	6e-13	75	Hordeum vulgare	Contig9167_at	Contig9167	-	-	2e-4	At5g64550	loricrin-related	C.G.	S.X.	Please select
0.11	2e-9	65	Oryza sativa	Os01g0621900	AK101393.1	-	-	1e-7	At5g64550	loricrin-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-5	52	Triticum aestivum	Ta.9284.1.S1_x_at	BE430259	-	-	6e-6	At1g64140	-	C.G.	S.X.	Please select
0.32	1e-99	363	Vitis vinifera	1614392_at	CF207745	hypothetical protein LOC100249189	-	2e-26	At5g64550	loricrin-related	C.G.	S.X.	Please select
0.09	5e-13	75	Zea mays	Zm.17629.1.A1_at	CD435755	-	-	2e-6	At5g64550	loricrin-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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