Gene omics information

Query gene ID	PtpAffx.200567.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	PtpAffx.200567.1.S1_at	pmrna1120	hypothetical protein	-	2e-39	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.6945.1.S1_at	CV282639	hypothetical protein	-	6e-38	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.4529.1.S1_at	CK091600	hypothetical protein	-	4e-138	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.4396.1.S1_at	CK091251	hypothetical protein	-	3e-12	At1g76150	maoC-like dehydratase domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.19725.1.S1_at	CN518078	hypothetical protein	-	3e-1	At1g36380	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.1287.2.S1_s_at	CX178052	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.108517.1.A1_at	CV236445	hypothetical protein	-	3e-14	At5g35460	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	94.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	40	PtpAffx.5565.1.S1_at	CV243868	hypothetical protein	-	3e-9	At5g11870	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.203939.1.S1_at	pmrna7771	hypothetical protein	-	7e-117	At5g16210	HEAT repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.59736.1.S1_at	BU882390	f-box family protein	-	2e+0	At1g67480	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.216536.1.S1_at	pmrna31375	hypothetical protein	-	3e-22	At3g14440	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.206838.1.S1_at	pmrna13574	hypothetical protein	-	4e-4	At2g25050	formin homology 2 domain-containing protein / FH2 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.203188.1.S1_at	pmrna6322	hypothetical protein	-	2e-8	At4g22760	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.200399.1.S1_s_at	pmrna802	-	-	4e-87	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.200399.1.S1_at	pmrna802	-	-	4e-87	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.200191.1.S1_at	pmrna358	hypothetical protein	-	8e-56	At1g80670	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	2e-39	163	Arabidopsis thaliana	At1g71190	843459	SAG18 (SENESCENCE ASSOCIATED GENE 18)	Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	5e-38	159	Glycine max	Gma.2234.2.S1_at	BE607788	-	-	9e-5	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	C.G.	S.X.	Please select
0.16	5e-17	87	Hordeum vulgare	Contig9390_at	Contig9390	-	-	8e-7	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	C.G.	S.X.	Please select
0.19	9e-19	95	Oryza sativa	Os01g0962200	AK067659.1	-	-	1e-17	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Triticum aestivum	TaAffx.86208.1.S1_at	CA614208	-	-	7e-1	At2g07820	unknown protein	C.G.	S.X.	Please select
0.54	1e-90	331	Vitis vinifera	1608659_s_at	CF513313	hypothetical protein LOC100258355	-	7e-43	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.12150.1.S1_at	AY106576.1	60S ribosomal protein L30	-	7e-15	At1g36240	60S ribosomal protein L30 (RPL30A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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