CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.200551.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.200551.1.S1_at pmrna1094 hypothetical protein - 5e-8 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) S.X. H.G.
0.50 78.6 PtpAffx.218212.1.S1_s_at pmrna33761 hypothetical protein - 2e-6 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.44 71.9 PtpAffx.218212.1.S1_at pmrna33761 hypothetical protein - 2e-6 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.14 23.5 Ptp.649.2.A1_at CV239852 - - 6e-9 At2g05070 LHCB2.2 S.X. H.G.
0.05 8.3 PtpAffx.10889.1.S1_at CV283550 hypothetical protein - 1e-1 At1g72610 GER1 (GERMIN-LIKE PROTEIN 1) S.X. H.G.
0.03 5.2 PtpAffx.216734.1.S1_at pmrna31713 bile acid:Na+ symporter family protein - 4e+0 At4g22600 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.3 99.5 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.9 98.7 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.6 97.9 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9 96.5 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7 96.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.79 0 1132 PtpAffx.200552.1.S1_at pmrna1095 hypothetical protein - 3e-3 At5g24550 BGLU32 (BETA GLUCOSIDASE 32) C.G. S.X.
0.11 3e-10 67 PtpAffx.200540.1.S1_s_at pmrna1075 hypothetical protein - 2e-6 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.10 3e-10 67 PtpAffx.200539.1.S1_at pmrna1074 hypothetical protein - 1e-5 At3g09260 PYK10 C.G. S.X.
0.08 2e-8 61 PtpAffx.126815.1.S1_at CX167822 - - 2e-3 At1g66270 BGLU21 C.G. S.X.
0.07 7e-8 59 Ptp.2892.1.S1_at BU894264 - - 1e+0 At2g33855 unknown protein C.G. S.X.
0.05 3e-7 57 PtpAffx.222672.1.S1_at pmrna40225 hypothetical protein - 9e-1 At5g55350 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related C.G. S.X.
0.06 1e-6 56 Ptp.7997.1.S1_at DN493042 - - 3e-1 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) C.G. S.X.
0.15 4e-6 54 PtpAffx.92049.1.S1_s_at DN494710 hypothetical protein - 3e-7 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.09 4e-6 54 PtpAffx.204078.1.S1_s_at pmrna8052 hypothetical protein - 4e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-8 59 Arabidopsis thaliana At3g60120 825182 BGLU27 (BETA GLUCOSIDASE 27) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA - - - C.G. S.X.
0.12 3e-7 57 Glycine max GmaAffx.92510.1.S1_at CF808235 - - 3e-7 At1g51490 BGLU36 (BETA GLUCOSIDASE 36) C.G. S.X.
0.03 3e-1 36 Hordeum vulgare Contig2737_at Contig2737 - - 9e-1 At4g22100 BGLU3 (BETA GLUCOSIDASE 2) C.G. S.X.
0.06 4e-7 57 Oryza sativa Os01g0508000 NM_193731.1 - Beta-glucosidase 5e-11 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) C.G. S.X.
0.04 5e-2 40 Triticum aestivum Ta.18240.1.S1_at CA632260 - - 3e+0 At5g58920 unknown protein C.G. S.X.
0.07 1e-2 40 Vitis vinifera 1620808_at AY039034.1 beta-glucosidase - 4e-10 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.02 8e-2 38 Zea mays Zm.7453.1.A1_at BM078460 Hypothetical protein LOC100192939 - 6e-3 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage