Gene omics information

Query gene ID PtpAffx.200419.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6388.1PtpAffx.200419.1.S1_atpmrna843hypothetical protein-2e-28At4g23420short-chain dehydrogenase/reductase (SDR) family proteinS.X.H.G.
0.2441.8PtpAffx.49799.1.A1_atCV270749hypothetical protein-1e+0At3g4459060S acidic ribosomal protein P2 (RPP2D)S.X.H.G.
0.1321.6PtpAffx.206986.1.S1_atpmrna13840--8e-1At3g15710signal peptidase, putativeS.X.H.G.
0.1118.1PtpAffx.18183.1.A1_atCV257931--1e-1At1g28570GDSL-motif lipase, putativeS.X.H.G.
0.1016.3PtpAffx.29030.1.S1_atDN501730--3e+0At3g56620integral membrane family protein / nodulin MtN21-relatedS.X.H.G.
0.023.6PtpAffx.209630.1.S1_x_atpmrna19029hypothetical protein-1e-1At2g44000-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.999.6GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
12.599.3GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.798.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
7.498.2GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
3.494.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
3.393.7GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.293.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.293.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
3.193.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.892.1GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.721e-119430PtpAffx.203254.1.S1_s_atpmrna6441hypothetical protein-7e-9At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.502e-47190Ptp.7404.1.S1_atDN487338hypothetical protein-2e-28At4g11410short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.223e-37157PtpAffx.118928.1.S1_atDN500975hypothetical protein-1e-19At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.353e-37157Ptp.3730.1.A1_atCV232031--6e-17At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.258e-1685PtpAffx.210728.1.S1_atpmrna21047hypothetical protein-6e-16At4g23430short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.091e-1481PtpAffx.125602.2.A1_a_atDN490967hypothetical protein-1e+0At3g54390transcription factorC.G.S.X.
0.097e-446PtpAffx.222849.1.S1_atpmrna40531hypothetical protein-9e-3At4g11410short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.061e-242PtpAffx.56362.1.A1_atCV268209--3e+0At5g63905unknown proteinC.G.S.X.
0.052e-138PtpAffx.6564.1.S1_atCK095231hypothetical protein-3e-8At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.302e-28127Arabidopsis thalianaAt4g23420828441short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA---C.G.S.X.
0.377e-38159Glycine maxGmaAffx.90994.1.S1_s_atCF806719--7e-12At4g11410short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.066e-548Hordeum vulgareContig4531_atContig4531--1e-5At2g37540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.054e-344Oryza sativaOs01g0151700AK099949.1-Short-chain dehydrogenase Tic325e-2At2g37540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.053e-550Triticum aestivumTa.4018.1.S1_atCD888469--7e-4At2g37540short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.356e-44176Vitis vinifera1619126_s_atCF515258hypothetical protein LOC100264493-1e-20At4g23420short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.061e-550Zea maysZm.6750.1.S1_atBM333179hypothetical protein LOC100217007-2e-4At4g11410short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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