Gene omics information

Query gene ID PtpAffx.200282.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6187.0PtpAffx.200282.1.S1_atpmrna560hypothetical protein-6e-1At2g25840OVA4 (ovule abortion 4)S.X.H.G.
0.3661.6PtpAffx.202454.1.S1_atpmrna4914hypothetical protein-9e-1At5g08055-S.X.H.G.
0.3661.6PtpAffx.249.292.A1_atCV260437hypothetical protein-3e-2At2g47400CP12-1S.X.H.G.
0.2747.1PtpAffx.18522.1.A1_atCV243784--2e-1At2g2771060S acidic ribosomal protein P2 (RPP2B)S.X.H.G.
0.2543.6PtpAffx.5132.2.A1_atCV260456hypothetical protein-1e-7At1g22200unknown proteinS.X.H.G.
0.2136.5Ptp.1358.2.A1_atCK092478--2e+0At1g67740PSBYS.X.H.G.
0.2136.5PtpAffx.217772.1.S1_atpmrna33168hypothetical protein-1e+0At5g01700protein phosphatase 2C, putative / PP2C, putativeS.X.H.G.
0.1932.7PtpAffx.221050.1.S1_x_atpmrna37608--1e-1At4g27590copper-binding protein-relatedS.X.H.G.
0.1729.1PtpAffx.26558.3.S1_s_atCN524616hypothetical protein-4e-1At3g26380glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family proteinS.X.H.G.
0.1626.9PtpAffx.214378.1.S1_atpmrna27979hypothetical protein-1e+0At2g19590ACO1 (ACC OXIDASE 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.599.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
7.298.1GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.295.6GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.995.1GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
3.494.0GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.791.8GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.590.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.490.4GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.490.4GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.289.3GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.552e-23109PtpAffx.164082.1.S1_atBI138279hypothetical protein-2e-14At2g25840OVA4 (ovule abortion 4)C.G.S.X.
0.038e-134PtpAffx.249.168.S1_atCV266288--9e-5At4g16190cysteine proteinase, putativeC.G.S.X.
0.028e-134PtpAffx.209365.1.S1_atpmrna18546hypothetical protein-4e-27At1g28060small nuclear ribonucleoprotein family protein / snRNP family proteinC.G.S.X.
0.028e-134PtpAffx.209365.1.S1_s_atpmrna18546hypothetical protein-4e-27At1g28060small nuclear ribonucleoprotein family protein / snRNP family proteinC.G.S.X.
0.028e-134PtpAffx.204431.1.S1_atpmrna8706hypothetical protein-9e-1At5g16950unknown proteinC.G.S.X.
0.043e+032PtpAffx.89130.1.A1_atCV270804hypothetical protein-3e-1At5g23290PDF5 (PREFOLDIN 5)C.G.S.X.
0.033e+032PtpAffx.222361.1.S1_x_atpmrna39712hypothetical protein-6e-6At2g34400pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.013e+032PtpAffx.222133.1.S1_x_atpmrna39364cc-nbs-lrr resistance protein-7e-2At4g18580unknown proteinC.G.S.X.
0.013e+032PtpAffx.222135.1.S1_atpmrna39366cc-nbs-lrr resistance protein-3e-1At5g56170-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.096e-134Arabidopsis thalianaAt2g25840817126OVA4 (ovule abortion 4)F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAP---C.G.S.X.
0.112e-756Glycine maxGma.8600.1.S1_atBU762414--2e-19At2g25840OVA4 (ovule abortion 4)C.G.S.X.
0.057e-236Hordeum vulgareContig13379_atContig13379--4e-22At2g25840OVA4 (ovule abortion 4)C.G.S.X.
0.065e+032Oryza sativaOs12g01592009640.m00544--5e-1At3g51500unknown proteinC.G.S.X.
0.046e-134Triticum aestivumTa.11839.2.S1_atCA620145--2e-8At1g76760ATY1 (ARABIDOPSIS THIOREDOXIN Y1)C.G.S.X.
0.082e-444Vitis vinifera1616948_atCB972594similar to putative tryptophanyl-tRNA synthetase-6e-12At2g25840OVA4 (ovule abortion 4)C.G.S.X.
0.034e+030Zea maysZm.8105.1.A1_atBM379418--1e-3At4g37640ACA2 (CALCIUM ATPASE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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