Gene omics information

Query gene ID	PtpAffx.200282.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.200282.1.S1_at	pmrna560	hypothetical protein	-	6e-1	At2g25840	OVA4 (ovule abortion 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.202454.1.S1_at	pmrna4914	hypothetical protein	-	9e-1	At5g08055	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.249.292.A1_at	CV260437	hypothetical protein	-	3e-2	At2g47400	CP12-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.18522.1.A1_at	CV243784	-	-	2e-1	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.5132.2.A1_at	CV260456	hypothetical protein	-	1e-7	At1g22200	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.1358.2.A1_at	CK092478	-	-	2e+0	At1g67740	PSBY	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.217772.1.S1_at	pmrna33168	hypothetical protein	-	1e+0	At5g01700	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.221050.1.S1_x_at	pmrna37608	-	-	1e-1	At4g27590	copper-binding protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.26558.3.S1_s_at	CN524616	hypothetical protein	-	4e-1	At3g26380	glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.214378.1.S1_at	pmrna27979	hypothetical protein	-	1e+0	At2g19590	ACO1 (ACC OXIDASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.5	99.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.2	98.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2	95.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	2e-23	109	PtpAffx.164082.1.S1_at	BI138279	hypothetical protein	-	2e-14	At2g25840	OVA4 (ovule abortion 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e-1	34	PtpAffx.249.168.S1_at	CV266288	-	-	9e-5	At4g16190	cysteine proteinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	34	PtpAffx.209365.1.S1_at	pmrna18546	hypothetical protein	-	4e-27	At1g28060	small nuclear ribonucleoprotein family protein / snRNP family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	34	PtpAffx.209365.1.S1_s_at	pmrna18546	hypothetical protein	-	4e-27	At1g28060	small nuclear ribonucleoprotein family protein / snRNP family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	34	PtpAffx.204431.1.S1_at	pmrna8706	hypothetical protein	-	9e-1	At5g16950	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+0	32	PtpAffx.89130.1.A1_at	CV270804	hypothetical protein	-	3e-1	At5g23290	PDF5 (PREFOLDIN 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e+0	32	PtpAffx.222361.1.S1_x_at	pmrna39712	hypothetical protein	-	6e-6	At2g34400	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.222133.1.S1_x_at	pmrna39364	cc-nbs-lrr resistance protein	-	7e-2	At4g18580	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.222135.1.S1_at	pmrna39366	cc-nbs-lrr resistance protein	-	3e-1	At5g56170	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	6e-1	34	Arabidopsis thaliana	At2g25840	817126	OVA4 (ovule abortion 4)	F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-7	56	Glycine max	Gma.8600.1.S1_at	BU762414	-	-	2e-19	At2g25840	OVA4 (ovule abortion 4)	C.G.	S.X.	Please select
0.05	7e-2	36	Hordeum vulgare	Contig13379_at	Contig13379	-	-	4e-22	At2g25840	OVA4 (ovule abortion 4)	C.G.	S.X.	Please select
0.06	5e+0	32	Oryza sativa	Os12g0159200	9640.m00544	-	-	5e-1	At3g51500	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e-1	34	Triticum aestivum	Ta.11839.2.S1_at	CA620145	-	-	2e-8	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	C.G.	S.X.	Please select
0.08	2e-4	44	Vitis vinifera	1616948_at	CB972594	similar to putative tryptophanyl-tRNA synthetase	-	6e-12	At2g25840	OVA4 (ovule abortion 4)	C.G.	S.X.	Please select
0.03	4e+0	30	Zea mays	Zm.8105.1.A1_at	BM379418	-	-	1e-3	At4g37640	ACA2 (CALCIUM ATPASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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