CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.200248.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.200248.1.S1_at pmrna481 hypothetical protein - 3e-7 At3g43740 leucine-rich repeat family protein S.X. H.G.
0.83 97.0 PtpAffx.204828.1.S1_at pmrna9522 - - 2e-1 At4g15393 CYP702A5 S.X. H.G.
0.67 91.1 PtpAffx.765.1.A1_at CV276457 hypothetical protein - 3e-16 At3g04520 THA2 (Threonine Aldolase 2) S.X. H.G.
0.67 91.1 PtpAffx.225157.1.S1_at pmrna44294 hypothetical protein - 1e-13 At1g14550 anionic peroxidase, putative S.X. H.G.
0.59 84.9 PtpAffx.130922.1.S1_s_at AJ773860 - - 5e-6 At1g66950 PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) S.X. H.G.
0.50 78.6 PtpAffx.209542.1.S1_at pmrna18907 hypothetical protein - 5e-1 At2g32200 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.3 99.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.5 99.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.3 99.2 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-7 56 PtpAffx.221277.1.S1_at pmrna38042 hypothetical protein - 2e-131 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) C.G. S.X.
0.04 4e-7 56 PtpAffx.221277.1.S1_s_at pmrna38042 hypothetical protein - 2e-131 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) C.G. S.X.
0.04 4e-7 56 PtpAffx.212403.1.S1_s_at pmrna24297 hypothetical protein - 4e-111 At1g71830 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) C.G. S.X.
0.05 2e-5 50 Ptp.4341.1.S1_at BU891209 hypothetical protein - 5e-32 At3g43740 leucine-rich repeat family protein C.G. S.X.
0.05 2e-2 40 PtpAffx.19036.1.S1_at CV267106 hypothetical protein - 5e-26 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
0.07 8e-2 38 PtpAffx.66787.1.S1_at DN483827 hypothetical protein - 8e-2 At1g71830 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) C.G. S.X.
0.03 1e+0 34 PtpAffx.39866.1.S1_at AJ778422 hypothetical protein - 3e-4 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
0.01 1e+0 34 PtpAffx.200472.1.S1_x_at pmrna952 hypothetical protein - 3e-38 At1g12460 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 1e+0 34 PtpAffx.200472.1.S1_at pmrna952 hypothetical protein - 3e-38 At1g12460 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-7 56 Arabidopsis thaliana At3g43740 823485 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA - - - C.G. S.X.
0.11 2e-5 50 Glycine max Gma.4507.2.S1_a_at CA785274 - - 4e-9 At3g43740 leucine-rich repeat family protein C.G. S.X.
0.07 1e-4 46 Hordeum vulgare Contig3638_at Contig3638 - - 7e-9 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
0.07 3e-2 40 Oryza sativa Os11g0514500 9639.m02864 - Sorghum bicolor leucine-rich repeat-containingextracellular glycoprotein precursor 4e-10 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
0.09 2e-2 40 Triticum aestivum TaAffx.112048.1.S1_at CA622290 - - 5e-9 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
0.07 2e-2 38 Vitis vinifera 1611166_at CF206128.1 - - 7e-3 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
0.07 7e-3 40 Zea mays Zm.10830.1.S1_at CF028241 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 - 3e-2 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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