CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.200200.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.200200.1.S1_x_at pmrna370 hypothetical protein - 2e-16 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) S.X. H.G.
0.61 87.0 PtpAffx.68287.1.S1_at CF228395 - - 4e-53 At5g19780 TUA5 S.X. H.G.
0.60 86.0 PtpAffx.34022.3.S1_a_at CV257054 hypothetical protein - 7e-6 At5g11680 unknown protein S.X. H.G.
0.57 84.2 PtpAffx.200651.1.S1_at pmrna1267 hypothetical protein - 3e-6 At3g16350 myb family transcription factor S.X. H.G.
0.42 68.6 Ptp.2347.1.A1_x_at CV280648 hypothetical protein - 1e-140 At3g27240 cytochrome c1, putative S.X. H.G.
0.34 58.3 Ptp.2347.1.A1_at CV280648 hypothetical protein - 1e-140 At3g27240 cytochrome c1, putative S.X. H.G.
0.33 57.5 PtpAffx.40097.1.S1_at CV262442 hypothetical protein - 5e-27 At1g63050 membrane bound O-acyl transferase (MBOAT) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.7 99.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
10.7 99.1 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
8.6 98.6 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.5 98.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.3 98.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 0 854 PtpAffx.54386.1.A1_s_at CV241824 hypothetical protein - 6e+0 Atcg01270 - C.G. S.X.
0.53 0 737 PtpAffx.149518.1.S1_s_at CF235910 hypothetical protein - 2e-14 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) C.G. S.X.
0.58 0 724 Ptp.685.1.S1_at CX658275 hypothetical protein - 9e-6 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) C.G. S.X.
0.58 0 664 Ptp.6424.1.S1_at DN493610 hypothetical protein - 1e-7 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) C.G. S.X.
0.52 8e-168 591 PtpAffx.4784.1.A1_s_at CV268464 hypothetical protein - 8e+0 At5g27290 unknown protein C.G. S.X.
0.02 2e-2 42 PtpAffx.212103.1.S1_at pmrna23737 hypothetical protein - 2e-2 At5g60810 unknown protein C.G. S.X.
0.01 2e-2 42 PtpAffx.202167.1.S1_x_at pmrna4335 hypothetical protein - 2e-38 At3g60880 dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) C.G. S.X.
0.01 2e-2 42 PtpAffx.202167.1.S1_at pmrna4335 hypothetical protein - 2e-38 At3g60880 dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) C.G. S.X.
0.02 2e-2 42 PtpAffx.18060.1.A1_at CV262720 - - 2e+0 At2g25060 plastocyanin-like domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-16 87 Arabidopsis thaliana At3g24160 822002 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) Encodes a putative Type 1 membrane protein (PMP). - - - C.G. S.X.
0.20 7e-11 69 Glycine max Gma.7259.1.S1_at CD398809 - - 3e-3 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) C.G. S.X.
0.05 4e-4 46 Hordeum vulgare Contig4857_at Contig4857 - - 2e-1 At2g36610 ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22) C.G. S.X.
0.02 4e-1 38 Oryza sativa OsAffx.26528.1.S1_at - - - 0 C.G. S.X.
0.03 8e-4 46 Triticum aestivum Ta.9195.3.S1_x_at CA648843 - - 3e+0 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
0.09 1e-12 73 Vitis vinifera 1611281_at BQ794736 hypothetical protein LOC100245241 - 2e+0 At5g50080 DNA binding / transcription factor C.G. S.X.
0.03 5e-3 42 Zea mays Zm.8507.1.A1_at BM074458 hypothetical protein LOC100276220 - 8e-1 At4g20280 TAF11 (TBP-ASSOCIATED FACTOR 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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