CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.200185.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.200185.1.S1_s_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) S.X. H.G.
0.60 86.0 PtpAffx.212416.1.S1_at pmrna24321 hypothetical protein - 5e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) S.X. H.G.
0.57 84.2 Ptp.3048.1.S1_at CV274194 - - 2e-80 At4g13940 MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) S.X. H.G.
0.55 82.2 PtpAffx.217867.1.S1_at pmrna33301 hypothetical protein - 4e-3 At1g78780 pathogenesis-related family protein S.X. H.G.
0.48 75.4 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 S.X. H.G.
0.40 67.0 PtpAffx.210259.1.S1_s_at pmrna20190 hypothetical protein - 1e-2 At5g62950 catalytic/ nucleotide binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.7 100.0 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
33.7 99.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
11.6 99.2 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.2 79.6 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
0.2 49.7 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
0.2 49.7 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.1 42.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.1 42.9 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
0.0 33.6 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
0.0 33.6 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 3057 PtpAffx.200185.1.S1_at pmrna342 hypothetical protein - 8e-4 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.51 0 712 PtpAffx.127059.1.A1_at CV258719 hypothetical protein - 1e-4 At1g66270 BGLU21 C.G. S.X.
0.21 1e-21 105 PtpAffx.203906.1.S1_at pmrna7716 hypothetical protein - 1e-5 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.04 2e-5 52 PtpAffx.126815.1.S1_at CX167822 - - 2e-3 At1g66270 BGLU21 C.G. S.X.
0.02 7e-5 50 PtpAffx.200551.1.S1_at pmrna1094 hypothetical protein - 5e-8 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
0.03 1e-3 46 PtpAffx.29632.1.S1_at CX654220 - - 2e-3 At3g18080 BGLU44 (B-S GLUCOSIDASE 44) C.G. S.X.
0.05 4e-3 44 PtpAffx.32431.1.S1_at CA926237 hypothetical protein - 2e-30 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) C.G. S.X.
0.06 4e-3 44 PtpAffx.225133.1.S1_at pmrna44255 hypothetical protein - 2e-2 At2g44470 BGLU29 (BETA GLUCOSIDASE 29) C.G. S.X.
0.05 4e-3 44 Ptp.5965.1.S1_s_at CX169141 hypothetical protein - 2e-4 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 8e-4 46 Arabidopsis thaliana At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA - - - C.G. S.X.
0.20 1e-9 65 Glycine max GmaAffx.92564.1.S1_at CF808289 - - 4e-5 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.03 2e+0 34 Hordeum vulgare Contig2737_at Contig2737 - - 9e-1 At4g22100 BGLU3 (BETA GLUCOSIDASE 2) C.G. S.X.
0.04 4e-7 57 Oryza sativa Os06g0683300 AK068614.1 - Beta-glucosidase 1e-10 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.04 5e-5 50 Triticum aestivum Ta.5589.2.S1_a_at CK152863 - - 2e-8 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) C.G. S.X.
0.13 1e-15 83 Vitis vinifera 1622281_at CD715637 hypothetical LOC100250160 - 2e-11 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.02 3e-4 46 Zea mays Zm.10740.1.S1_a_at CO520864 non-cyanogenic beta-glucosidase - 1e-2 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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