Gene omics information

Query gene ID	PtpAffx.200110.1.S1_at
Gene name	glycosyl transferase family 37
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.200110.1.S1_at	pmrna195	glycosyl transferase family 37	-	3e-15	At2g03210	FUT2 (FUCOSYLTRANSFERASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.7936.2.A1_at	CV244968	-	-	8e-6	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.78230.1.A1_at	CV264826	hypothetical protein	-	7e-12	At4g01700	chitinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.224549.1.S1_s_at	pmrna43182	hypothetical protein	-	8e-3	At1g05250	peroxidase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.225309.1.S1_s_at	pmrna44567	hypothetical protein	-	2e-1	At5g39580	peroxidase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.86209.1.S1_at	CV272652	hypothetical protein	-	1e-7	At5g66490	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.5	99.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.4	99.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
11.2	99.1	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.5	98.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1	96.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	1521	PtpAffx.203578.1.S1_at	pmrna7107	glycosyltransferase family-37	-	8e-13	At2g03210	FUT2 (FUCOSYLTRANSFERASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	4e-28	127	PtpAffx.203577.1.S1_at	pmrna7106	glycosyltransferase family-37	-	1e-2	At2g03210	FUT2 (FUCOSYLTRANSFERASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	2e-17	91	PtpAffx.203576.1.S1_at	pmrna7105	glycosyltransferase family-37	-	3e-3	At2g03220	FT1 (FUCOSYLTRANSFERASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-8	61	PtpAffx.95958.1.A1_at	CV226293	glycosyltransferase family-37	-	6e-9	At2g03210	FUT2 (FUCOSYLTRANSFERASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	7e-8	59	PtpAffx.75184.1.A1_at	CV282822	hypothetical protein	-	7e-9	At2g03210	FUT2 (FUCOSYLTRANSFERASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	7e-5	50	PtpAffx.143601.2.S1_at	CV272206	hypothetical protein	-	9e-2	At2g43190	ribonuclease P family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	6e-2	40	PtpAffx.223967.1.S1_at	pmrna42193	hypothetical protein	-	3e+0	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	6e-2	40	PtpAffx.200111.1.S1_s_at	pmrna199	hypothetical protein	-	2e+0	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	6e-2	40	PtpAffx.200111.1.S1_at	pmrna199	hypothetical protein	-	2e+0	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-15	83	Arabidopsis thaliana	At2g03210	814850	FUT2 (FUCOSYLTRANSFERASE 2)	member of Glycosyltransferase Family- 37	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-4	48	Glycine max	GmaAffx.87366.1.S1_at	BI321488	-	-	3e-2	At1g14070	FUT7	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	Contig20588_at	Contig20588	-	-	1e+0	At5g38130	transferase family protein	C.G.	S.X.	Please select
0.05	4e-4	48	Oryza sativa	Os02g0763900	AK100977.1	-	Galactoside 2-alpha-L-fucosyltransferase (EC2.4.1.69) (Xyloglucan alpha-(1,2)-fucosyltransferase)(AtFUT1)	9e-1	At5g65420	CYCD4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Triticum aestivum	TaAffx.79383.1.S1_at	CA716967	-	-	6e-2	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1613321_at	CF516415	hypothetical protein LOC100244395	-	5e-49	At5g55070	2-oxoacid dehydrogenase family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.18305.1.A1_at	CO533683	Isocitrate lyase	-	1e-9	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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