Gene omics information

Query gene ID	PtpAffx.1980.3.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.1980.3.A1_a_at	CV246685	hypothetical protein	-	3e-4	At4g27380	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.1980.1.S1_a_at	CV250106	hypothetical protein	-	3e-4	At4g27380	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.30207.1.S1_s_at	CV257448	hypothetical protein	-	2e-61	At3g11730	ATFP8	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.6781.1.S1_s_at	BU832419	hypothetical protein	-	5e-23	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.10545.1.S1_at	CK096379	hypothetical protein	-	5e-26	At5g38630	ACYB-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.11488.1.S1_at	CV244200	hypothetical protein	-	6e-49	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	93.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	3e-122	438	PtpAffx.1980.1.S1_a_at	CV250106	hypothetical protein	-	3e-4	At4g27380	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	40	PtpAffx.99162.1.S1_at	CV279989	hypothetical protein	-	1e+0	At2g17870	cold-shock DNA-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	40	PtpAffx.983.1.A1_at	CX172753	hypothetical protein	-	5e-10	At5g64180	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	40	PtpAffx.9731.1.S1_at	CV255821	hypothetical protein	-	1e+1	At5g44582	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-2	40	PtpAffx.9792.1.S1_s_at	BP930774	hypothetical protein	-	7e-24	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-2	40	PtpAffx.97498.1.S1_at	CV246186	-	-	8e-2	At4g09890	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	40	PtpAffx.95744.1.A1_at	CV238553	-	-	1e-41	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-2	40	PtpAffx.95314.1.A1_at	CV252554	-	-	4e-2	At1g64930	CYP89A7	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-2	40	PtpAffx.95404.1.A1_at	CV247625	-	-	1e+0	At2g28210	ATACA2 (ALPHA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-4	46	Arabidopsis thaliana	At4g27380	828846	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	1e-7	57	Glycine max	GmaAffx.47763.1.S1_at	CD405232	-	-	8e-1	At3g61900	auxin-responsive family protein	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	Contig13171_at	Contig13171	-	-	3e+0	At5g23405	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os.40073.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	TaAffx.24874.1.S1_at	CA710703	-	-	7e+0	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	C.G.	S.X.	Please select
0.10	9e-14	75	Vitis vinifera	1607306_at	CB980890	hypothetical protein LOC100255528	-	1e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	C.G.	S.X.	Please select
0.14	2e+0	32	Zea mays	Zm.1954.1.S1_at	AY104136.1	hypothetical protein LOC100278554	-	4e+0	At5g67620	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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