Gene omics information

Query gene ID PtpAffx.1980.3.A1_a_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8397.0PtpAffx.1980.3.A1_a_atCV246685hypothetical protein-3e-4At4g27380unknown proteinS.X.H.G.
0.9199.2PtpAffx.1980.1.S1_a_atCV250106hypothetical protein-3e-4At4g27380unknown proteinS.X.H.G.
0.7393.6PtpAffx.30207.1.S1_s_atCV257448hypothetical protein-2e-61At3g11730ATFP8S.X.H.G.
0.7393.6Ptp.6781.1.S1_s_atBU832419hypothetical protein-5e-23At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)S.X.H.G.
0.6086.0PtpAffx.10545.1.S1_atCK096379hypothetical protein-5e-26At5g38630ACYB-1S.X.H.G.
0.4471.9PtpAffx.11488.1.S1_atCV244200hypothetical protein-6e-49At4g31720TAFII15 (TBP-ASSOCIATED FACTOR II 15)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.293.5GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.791.8GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.691.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.590.9GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.088.0GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.987.2GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
1.987.2GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
1.987.2GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.886.4GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.723e-122438PtpAffx.1980.1.S1_a_atCV250106hypothetical protein-3e-4At4g27380unknown proteinC.G.S.X.
0.032e-240PtpAffx.99162.1.S1_atCV279989hypothetical protein-1e+0At2g17870cold-shock DNA-binding family proteinC.G.S.X.
0.032e-240PtpAffx.983.1.A1_atCX172753hypothetical protein-5e-10At5g64180unknown proteinC.G.S.X.
0.022e-240PtpAffx.9731.1.S1_atCV255821hypothetical protein-1e+1At5g44582unknown proteinC.G.S.X.
0.012e-240PtpAffx.9792.1.S1_s_atBP930774hypothetical protein-7e-24At1g49760PAB8 (POLY(A) BINDING PROTEIN 8)C.G.S.X.
0.042e-240PtpAffx.97498.1.S1_atCV246186--8e-2At4g09890unknown proteinC.G.S.X.
0.032e-240PtpAffx.95744.1.A1_atCV238553--1e-41At3g55280RPL23AB (RIBOSOMAL PROTEIN L23AB)C.G.S.X.
0.042e-240PtpAffx.95314.1.A1_atCV252554--4e-2At1g64930CYP89A7C.G.S.X.
0.042e-240PtpAffx.95404.1.A1_atCV247625--1e+0At2g28210ATACA2 (ALPHA CARBONIC ANHYDRASE 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.093e-446Arabidopsis thalianaAt4g27380828846unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO---C.G.S.X.
0.201e-757Glycine maxGmaAffx.47763.1.S1_atCD405232--8e-1At3g61900auxin-responsive family proteinC.G.S.X.
0.045e-134Hordeum vulgareContig13171_atContig13171--3e+0At5g23405high mobility group (HMG1/2) family proteinC.G.S.X.
0.041e-138Oryza sativaOs.40073.1.S1_at---0C.G.S.X.
0.041e+034Triticum aestivumTaAffx.24874.1.S1_atCA710703--7e+0At3g09940MDHAR (MONODEHYDROASCORBATE REDUCTASE)C.G.S.X.
0.109e-1475Vitis vinifera1607306_atCB980890hypothetical protein LOC100255528-1e+0At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedC.G.S.X.
0.142e+032Zea maysZm.1954.1.S1_atAY104136.1hypothetical protein LOC100278554-4e+0At5g67620unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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