CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.19537.2.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.19537.2.S1_s_at CV225503 hypothetical protein - 4e-104 At3g61790 seven in absentia (SINA) family protein S.X. H.G.
0.46 73.7 PtpAffx.39717.1.S1_at CV268106 hypothetical protein - 2e-10 At4g03550 ATGSL05 (GLUCAN SYNTHASE-LIKE 5) S.X. H.G.
0.40 67.0 PtpAffx.145411.1.S1_at BU816047 hypothetical protein - 3e-1 At1g30500 NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) S.X. H.G.
0.36 61.6 PtpAffx.18162.1.S1_at CV258688 hypothetical protein - 2e-3 At5g56020 - S.X. H.G.
0.33 57.5 PtpAffx.13455.1.S1_at CK096324 hypothetical protein - 2e-6 At2g27480 calcium ion binding S.X. H.G.
0.21 36.5 PtpAffx.213349.1.S1_s_at pmrna26118 hypothetical protein - 5e-50 At3g58050 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 95.6 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 1935 PtpAffx.19537.2.S1_at CV225503 hypothetical protein - 4e-104 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.43 0 664 PtpAffx.19537.1.S1_at CV230539 hypothetical protein - 3e-26 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.43 7e-79 295 PtpAffx.283.6.S1_a_at CV229539 hypothetical protein - 8e-47 At4g27880 seven in absentia (SINA) family protein C.G. S.X.
0.13 2e-38 161 PtpAffx.283.20.S1_a_at BU866506 hypothetical protein - 3e-23 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.13 2e-38 161 PtpAffx.283.20.S1_at BU866506 hypothetical protein - 3e-23 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.13 3e-19 97 Ptp.5653.1.S1_at CK110426 hypothetical protein - 6e-56 At3g58040 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) C.G. S.X.
0.11 5e-18 93 Ptp.4870.1.S1_at BU810859 - - 5e-5 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.14 1e-15 85 PtpAffx.200053.1.S1_at pmrna99 hypothetical protein - 5e-7 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.15 3e-10 67 PtpAffx.203645.1.S1_at pmrna7229 hypothetical protein - 9e-9 At2g41980 seven in absentia (SINA) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 4e-104 379 Arabidopsis thaliana At3g61790 825352 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF - - - C.G. S.X.
0.36 8e-60 232 Glycine max Gma.5088.2.S1_at CA937805 - - 4e-36 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.31 8e-70 264 Hordeum vulgare Contig6334_at Contig6334 - - 6e-57 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.37 3e-26 121 Oryza sativa Os02g0293400 AK072985.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 6e-45 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.35 7e-66 252 Triticum aestivum Ta.29541.1.S1_at CK196948 - - 3e-50 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.46 2e-88 325 Vitis vinifera 1609250_at Y18471.1 SINA1p - 2e-60 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.37 1e-49 196 Zea mays Zm.378.1.S1_at CO532007 seven in absentia homolog - 3e-25 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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