Gene omics information

Query gene ID	PtpAffx.19120.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.19120.1.A1_at	CV260849	hypothetical protein	-	4e-5	At5g11640	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.99107.1.S1_s_at	CV227515	hypothetical protein	-	8e-89	At5g45130	RHA1 (RAB HOMOLOG 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.21928.1.S1_at	CV256613	hypothetical protein	-	6e-20	At3g55830	EPC1 (ECTOPICALLY PARTING CELLS)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.39613.1.S1_s_at	CV227967	hypothetical protein	-	4e-13	At1g69230	SP1L2 (SPIRAL1-LIKE2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.1321.1.S1_a_at	CV231255	hypothetical protein	-	2e-43	At3g49420	Got1-like family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.5077.1.S1_x_at	AF121195.2	hypothetical protein	-	2e-25	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.2799.1.S1_at	BU874348	hypothetical protein	-	3e-20	At5g47890	NADH-ubiquinone oxidoreductase B8 subunit, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.2	99.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
12.6	99.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
10.0	98.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-2	40	PtpAffx.223034.1.S1_at	pmrna40821	hypothetical protein	-	2e+0	At4g21720	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.211050.1.S1_at	pmrna21708	hypothetical protein	-	1e-6	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.211050.1.S1_s_at	pmrna21708	hypothetical protein	-	1e-6	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.149972.1.S1_at	DN498008	-	-	9e-1	At2g45740	PEX11D	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.99547.1.S1_at	BU837914	hypothetical protein	-	2e+1	At5g27790	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.225148.1.S1_at	pmrna44281	BED finger-nbs-lrr resistance protein	-	4e-1	At3g22450	structural constituent of ribosome	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.224936.1.S1_at	pmrna43870	hypothetical protein	-	2e-1	At5g36980	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.224919.1.S1_at	pmrna43846	BED finger-nbs-lrr resistance protein	-	1e+0	At2g28660	copper-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.212751.1.S1_at	pmrna24940	hypothetical protein	-	2e-8	At1g24150	FH4 (FORMIN HOMOLOGUE 4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-5	50	Arabidopsis thaliana	At5g11640	831036	-	F:unknown;P:unknown;C:unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	5e-36	153	Glycine max	GmaAffx.26697.1.S1_at	BE821770	-	-	1e+0	At3g27809	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Hordeum vulgare	HX11F10r_at	HX11F10r	-	-	3e+0	At5g25410	unknown protein	C.G.	S.X.	Please select
0.06	9e-11	69	Oryza sativa	Os01g0200400	AK070272.1	-	Thioredoxin domain 2 containing protein	9e-3	At5g11640	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-3	44	Triticum aestivum	Ta.1836.1.S1_at	CD452976	-	-	2e+0	At4g36990	HSF4 (HEAT SHOCK FACTOR 4)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1613687_at	CD713993	-	-	4e+0	At4g01590	unknown protein	C.G.	S.X.	Please select
0.07	2e-5	50	Zea mays	Zm.8877.1.A1_at	BM079605	hypothetical protein LOC100274262	-	2e-1	At5g11640	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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