CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.18964.1.A1_at

Gene name NAC domain protein, IPR003441

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.18964.1.A1_at CV227265 NAC domain protein, IPR003441 - 4e-2 At2g04560 transferase, transferring glycosyl groups S.X. H.G.
0.50 78.6 PtpAffx.205565.1.S1_at pmrna11000 - - 6e-9 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) S.X. H.G.
0.50 78.6 PtpAffx.24024.1.A1_s_at CV278445 hypothetical protein - 1e+0 At4g10330 glycine-rich protein S.X. H.G.
0.50 78.6 PtpAffx.38638.1.S1_at CV261182 hypothetical protein - 7e-1 At1g15390 PDF1A (PEPTIDE DEFORMYLASE 1A) S.X. H.G.
0.46 73.7 Ptp.3644.1.S1_x_at CV234511 2-oxoglutarate-dependent dioxygenase - 2e-7 At3g19000 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.36 61.6 PtpAffx.211391.1.S1_at pmrna22327 hypothetical protein - 8e-2 At4g00770 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.7 99.7 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
16.1 99.6 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5 96.1 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3 95.8 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-9 61 PtpAffx.134708.1.A1_at CV225426 NAC domain protein, IPR003441 - 1e-1 At5g12870 MYB46 (MYB DOMAIN PROTEIN 46) C.G. S.X.
0.07 4e-3 42 PtpAffx.109937.1.A1_at CK097441 NAC domain protein, IPR003441 - 4e-1 At4g24700 unknown protein C.G. S.X.
0.01 1e+0 34 PtpAffx.225776.1.S1_s_at pmrna45366 tir-nbs-lrr resistance protein /// hypothetical protein - 1e-1 At2g39690 unknown protein C.G. S.X.
0.03 4e+0 32 PtpAffx.94706.1.A1_at CV274800 - - 3e-1 At2g24020 unknown protein C.G. S.X.
0.02 4e+0 32 PtpAffx.221938.1.S1_at pmrna39057 hypothetical protein - 2e+0 At2g03190 ASK16 (ARABIDOPSIS SKP1-LIKE 16) C.G. S.X.
0.02 4e+0 32 PtpAffx.215848.1.S1_at pmrna30265 hypothetical protein - 2e+0 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.03 4e+0 32 PtpAffx.215444.1.S1_at pmrna29641 hypothetical protein - 2e-30 At5g38660 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) C.G. S.X.
0.01 4e+0 32 PtpAffx.211851.1.S1_at pmrna23255 hypothetical protein - 1e-54 At3g23670 KINESIN-12B C.G. S.X.
0.01 4e+0 32 PtpAffx.209110.1.S1_at pmrna18021 hypothetical protein - 4e-14 At3g53480 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 38 Arabidopsis thaliana At2g04560 814998 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:lipid A biosynthetic process;C:cellular_component unknown;OBP - - - C.G. S.X.
0.03 4e+0 32 Glycine max HgAffx.7419.1.S1_at CB824792 - - 8e-2 At3g56580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 1e+0 32 Hordeum vulgare HV02E02u_at HV02E02u - - 1e+0 At1g65170 ubiquitin carboxyl-terminal hydrolase family protein C.G. S.X.
0.04 1e+0 34 Oryza sativa Os10g0177400 CR280915 - Pathogenicity protein PATH531-like protein 4e+0 At2g44000 - C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.37354.2.S1_at CA600649 - - 4e+0 At5g23330 riboflavin biosynthesis protein-related C.G. S.X.
0.04 1e+1 28 Vitis vinifera 1622631_at CA818766 - - 3e+0 At2g15325 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 5e+0 30 Zea mays ZmAffx.413.1.A1_at AI676845 - - 8e-1 At5g13250 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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