Gene omics information

Query gene ID PtpAffx.18484.1.A1_at
Gene name hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.18484.1.A1_atCV245083hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5-2e-12At2g17265HSK (HOMOSERINE KINASE)S.X.H.G.
0.4471.9Ptp.6771.1.S1_s_atCV274176hypothetical protein-6e-19At2g3206040S ribosomal protein S12 (RPS12C)S.X.H.G.
0.4471.9Ptp.7561.1.S1_s_atCV280263--2e-68At3g11940ATRPS5A (RIBOSOMAL PROTEIN 5A)S.X.H.G.
0.3559.7Ptp.5846.1.S1_s_atCV238868hypothetical protein-1e-50At5g1552040S ribosomal protein S19 (RPS19B)S.X.H.G.
0.3357.5Ptp.4312.1.S1_s_atCV260801hypothetical protein-4e-50At5g5985040S ribosomal protein S15A (RPS15aF)S.X.H.G.
0.3153.7Ptp.652.1.S1_s_atCX179294hypothetical protein-2e-76At4g00100ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)S.X.H.G.
0.2950.5Ptp.2403.1.S1_s_atCV259541hypothetical protein-1e-14At4g16830nuclear RNA-binding protein (RGGA)S.X.H.G.
0.2543.6PtpAffx.25979.1.S1_atDN488054hypothetical protein-3e-12At4g16630DEAD/DEAH box helicase, putative (RH28)S.X.H.G.
0.2034.6Ptp.5545.1.S1_s_atCN524341hypothetical protein-2e-47At3g0963060S ribosomal protein L4/L1 (RPL4A)S.X.H.G.
0.0711.6PtpAffx.222229.1.S1_atpmrna39505SET domain protein-1e-29At3g21820ATXR2 (HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.498.8GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
7.798.3GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
4.896.4GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
4.796.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.590.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
2.590.9GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.382e-112406PtpAffx.147311.1.A1_atCV242075hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5-2e-12At2g17265HSK (HOMOSERINE KINASE)C.G.S.X.
0.222e-74280PtpAffx.107905.2.A1_atCV261609--1e-4At2g17265HSK (HOMOSERINE KINASE)C.G.S.X.
0.052e-757PtpAffx.107905.1.S1_atBP925314hypothetical protein-4e+0Atcg00700-C.G.S.X.
0.022e-654PtpAffx.204369.1.S1_atpmrna8588glutamate-gated kainate-type ion channel receptor subunit GluR5-2e-11At2g17260GLR2 (GLUTAMATE RECEPTOR 2)C.G.S.X.
0.022e+034PtpAffx.97582.1.S1_atCF227750hypothetical protein-1e+0At5g50335unknown proteinC.G.S.X.
0.022e+034PtpAffx.6866.1.A1_a_atCV233270hypothetical protein-5e+0At5g27090AGL54C.G.S.X.
0.002e+034PtpAffx.222227.1.S1_atpmrna39502hypothetical protein-5e-29At1g67120ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor bindingC.G.S.X.
0.022e+034PtpAffx.221489.1.S1_atpmrna38395hypothetical protein-4e-3At3g52820PAP22 (PURPLE ACID PHOSPHATASE 22)C.G.S.X.
0.022e+034PtpAffx.221491.1.S1_atpmrna38397hypothetical protein-2e-7At3g52820PAP22 (PURPLE ACID PHOSPHATASE 22)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.232e-1273Arabidopsis thalianaAt2g17265816232HSK (HOMOSERINE KINASE)Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts.---C.G.S.X.
0.084e-550Glycine maxGmaAffx.92843.1.S1_atCF808568--1e-3At2g17265HSK (HOMOSERINE KINASE)C.G.S.X.
0.035e-238Hordeum vulgareHVSMEg0009N05r2_s_atHVSMEg0009N05r2--3e+0At4g14660NRPE7C.G.S.X.
0.022e-138Oryza sativaOs10g0101900AK064524.1-Hypothetical protein7e+0At5g15460MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)C.G.S.X.
0.032e+034Triticum aestivumTaAffx.54536.1.S1_x_atCA680299--2e-1At2g38340AP2 domain-containing transcription factor, putative (DRE2B)C.G.S.X.
0.078e-340Vitis vinifera1616497_atCB981932hypothetical protein LOC100262039-2e-1At1g04260MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)C.G.S.X.
0.035e-238Zea maysZm.11599.1.A1_atBM379225--5e+0At5g59990-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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