Gene omics information

Query gene ID PtpAffx.18064.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7192.6PtpAffx.18064.1.S1_atCV262645hypothetical protein-2e-19At4g18060clathrin bindingS.X.H.G.
0.5380.5Ptp.6372.1.S1_atCV246563hypothetical protein-1e-59At1g15370-S.X.H.G.
0.4471.9Ptp.2551.1.S1_atBU878491hypothetical protein-2e-52At2g39960microsomal signal peptidase 25 kDa subunit, putative (SPC25)S.X.H.G.
0.3661.6Ptp.470.1.S1_s_atCV247343hypothetical protein-6e-40At4g15930microtubule motorS.X.H.G.
0.2441.8PtpAffx.7994.1.S1_atCV263629hypothetical protein-4e-2At2g45530zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.2340.5PtpAffx.134873.1.S1_s_atCN549338hypothetical protein-7e-1At1g29390COR314-TM2S.X.H.G.
0.2340.5PtpAffx.80529.1.A1_s_atBP936518hypothetical protein-1e-3At5g18190protein kinase family proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.798.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue series
8.798.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
6.597.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
2.188.6GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.987.2GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.987.2GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
1.785.5GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
1.785.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
1.785.5GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
1.684.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.178e-57222PtpAffx.218493.1.S1_x_atpmrna34136hypothetical protein-1e-16At4g18060clathrin bindingC.G.S.X.
0.178e-57222PtpAffx.218493.1.S1_atpmrna34136hypothetical protein-1e-16At4g18060clathrin bindingC.G.S.X.
0.031e-656PtpAffx.8133.2.A1_atCV259144hypothetical protein-6e-17At1g31440SH3 domain-containing protein 1 (SH3P1)C.G.S.X.
0.045e-654PtpAffx.8133.3.A1_atCV266633hypothetical protein-3e-14At1g31440SH3 domain-containing protein 1 (SH3P1)C.G.S.X.
0.085e-654PtpAffx.38736.1.S1_a_atCF235217hypothetical protein-6e-46At4g34660SH3 domain-containing protein 2 (SH3P2)C.G.S.X.
0.047e-550PtpAffx.8133.1.A1_atCK097751hypothetical protein-6e-2At4g39020SH3 domain-containing proteinC.G.S.X.
0.011e+036PtpAffx.209998.1.S1_atpmrna19722cyclic nucleotide-gated channel-1e-2At5g26751ATSK11C.G.S.X.
0.011e+036PtpAffx.200303.1.S1_atpmrna599hypothetical protein-6e-1At3g45252-C.G.S.X.
0.021e+036PtpAffx.140937.1.A1_atCV239361nucleosome/chromatin assembly factor group-2e-3At1g74560NRP1 (NAP1-RELATED PROTEIN 1)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.302e-1997Arabidopsis thalianaAt4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPB---C.G.S.X.
0.054e-344Glycine maxGma.9688.2.S1_a_atCA938457--2e-1At5g30490-C.G.S.X.
0.024e-136Hordeum vulgareContig7332_atContig7332--1e-15At4g34660SH3 domain-containing protein 2 (SH3P2)C.G.S.X.
0.021e-450Oryza sativaOs10g0512700AK067223.1-SH3 domain-containing protein 33e-9At4g34660SH3 domain-containing protein 2 (SH3P2)C.G.S.X.
0.098e-136Triticum aestivumTa.2985.2.S1_a_atBJ244836--1e-3At4g18060clathrin bindingC.G.S.X.
0.074e-1581Vitis vinifera1615841_atCF203758.1hypothetical protein LOC100258967-8e-15At4g18060clathrin bindingC.G.S.X.
0.013e-136Zea maysZm.19245.1.S1_atCO531390hypothetical protein LOC100272927-3e-46At5g09650AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage