Gene omics information

Query gene ID	PtpAffx.1761.2.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	75.4	PtpAffx.1761.2.S1_at	DN484457	hypothetical protein	-	5e-2	At1g75380	wound-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.9234.1.A1_s_at	BI122577	hypothetical protein	-	9e-3	At5g18140	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.32068.1.S1_s_at	CV260347	hypothetical protein	-	2e-9	At2g36630	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.160561.1.A1_at	CV228812	-	-	3e+0	At3g57760	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.17383.2.A1_s_at	CV283276	hypothetical protein	-	8e-12	At2g45740	PEX11D	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	Ptp.2093.1.S1_at	CV277161	hypothetical protein	-	2e-34	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.1259.1.S1_s_at	CV272573	hypothetical protein	-	4e-1	At3g12410	3'-5' exonuclease/ nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.5103.1.S1_s_at	BU874135	hypothetical protein	-	2e-37	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.249.148.A1_a_at	CV230214	hypothetical protein	-	1e-15	At2g44360	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.0	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.9	97.4	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	PtpAffx.200510.1.S1_at	pmrna1032	2-oxoglutarate-dependent dioxygenase	-	2e-6	At1g52820	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.28232.1.A1_at	BU814754	-	-	8e-18	At4g19710	bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.207950.1.S1_at	pmrna15777	hypothetical protein	-	6e-5	At1g06145	EMB1444 (EMBRYO DEFECTIVE 1444)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.161051.1.S1_at	AJ774891	hypothetical protein	-	2e-40	At5g64860	DPE1 (DISPROPORTIONATING ENZYME)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e+0	32	PtpAffx.55411.1.S1_s_at	CX654904	hypothetical protein	-	5e-45	At2g21580	40S ribosomal protein S25 (RPS25B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	32	PtpAffx.4328.2.S1_at	BU894843	-	-	4e-2	At1g23440	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	32	PtpAffx.224856.1.S1_at	pmrna43737	tir-nbs-lrr resistance protein	-	1e-2	At2g17050	disease resistance protein (TIR-NBS-LRR class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	32	PtpAffx.221982.1.S1_at	pmrna39140	hypothetical protein	-	1e-33	At4g36290	ATP-binding region, ATPase-like domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e+0	32	PtpAffx.217035.1.S1_at	pmrna32151	hypothetical protein	-	1e-7	At1g72390	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At1g75380	843874	wound-responsive protein-related	F:unknown;P:unknown;C:unknown;BOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.10440.1.S1_at	BU084373	-	-	3e+0	At2g22510	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Hordeum vulgare	Contig24767_at	Contig24767	-	-	4e-3	At3g58420	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Oryza sativa	Os.27318.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	32	Triticum aestivum	TaAffx.528.1.S1_at	BQ802169	-	-	2e+0	At3g56520	no apical meristem (NAM) family protein	C.G.	S.X.	Please select
0.23	6e-11	65	Vitis vinifera	1620234_at	CA816993	hypothetical protein LOC100255239	-	4e+0	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.04	3e-1	34	Zea mays	Zm.4741.2.A1_x_at	BE345072	-	-	4e+0	At4g30460	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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