Gene omics information

Query gene ID	PtpAffx.17383.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.17383.1.S1_s_at	CV283454	hypothetical protein	-	9e-59	At1g01820	PEX11C (PEROXIN 11C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.89237.1.A1_at	CV232343	hypothetical protein	-	3e-11	At1g21710	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.38108.1.A1_at	CV225915	glycosyl transferase	-	9e-1	At4g01230	reticulon family protein (RTNLB7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.209883.1.S1_at	pmrna19469	hypothetical protein	-	4e-50	At1g29330	ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.6289.1.A1_a_at	CV267715	-	-	1e-4	At1g74440	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.48233.1.A1_at	CV265875	hypothetical protein	-	2e-9	At1g62600	flavin-containing monooxygenase family protein / FMO family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	94.7	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	0	1572	Ptp.2532.1.S1_x_at	CV277382	hypothetical protein	-	3e-52	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	0	783	PtpAffx.17383.2.A1_s_at	CV283276	hypothetical protein	-	8e-12	At2g45740	PEX11D	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	3e-118	426	PtpAffx.17383.3.A1_at	CV283378	hypothetical protein	-	1e-14	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	5e-46	186	PtpAffx.32943.1.A1_at	CK094854	hypothetical protein	-	7e-3	At3g61070	PEX11E	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-21	105	PtpAffx.76211.1.A1_at	CV240680	hypothetical protein	-	5e-2	At2g45740	PEX11D	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.47522.1.S1_at	CV226318	hypothetical protein	-	1e-5	At5g47210	nuclear RNA-binding protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.221282.1.S1_at	pmrna38054	hypothetical protein	-	2e-2	At3g13175	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.213081.1.S1_at	pmrna25600	hypothetical protein	-	6e-31	At4g25540	MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.206068.1.S1_at	pmrna12026	hypothetical protein	-	5e-1	At5g22555	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	9e-59	228	Arabidopsis thaliana	At1g01820	839257	PEX11C (PEROXIN 11C)	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	3e-44	180	Glycine max	Gma.1739.1.S1_at	BG237697	-	-	2e-13	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please select
0.18	4e-13	75	Hordeum vulgare	Contig7593_at	Contig7593	-	-	6e-7	At3g61070	PEX11E	C.G.	S.X.	Please select
0.16	3e-14	81	Oryza sativa	Os06g0127000	AK100186.1	-	Peroxisomal biogenesis factor 11 family protein	7e-16	At2g45740	PEX11D	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	2e-10	67	Triticum aestivum	Ta.2871.1.S1_at	CK193836	-	-	5e-11	At2g45740	PEX11D	C.G.	S.X.	Please select
0.43	6e-162	569	Vitis vinifera	1615857_s_at	BQ797394	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please select
0.04	2e-2	40	Zea mays	Zm.1011.1.S1_at	BM073180	hypothetical protein LOC100192700	-	3e+0	At1g35242	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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