Gene omics information

Query gene ID	PtpAffx.17228.2.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.17228.2.S1_a_at	CV261896	hypothetical protein	-	1e-160	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.31053.1.A1_s_at	CV246650	hypothetical protein	-	8e-40	At5g54760	eukaryotic translation initiation factor SUI1, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.249.28.A1_s_at	CK318136	-	-	3e-36	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.61485.1.A1_s_at	BP931704	-	-	4e-2	At2g22055	RALFL15 (RALF-LIKE 15)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.4916.2.S1_s_at	CV270963	hypothetical protein	-	5e-84	At5g26751	ATSK11	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.1476.1.S1_s_at	CV265783	hypothetical protein	-	5e-35	At2g25310	carbohydrate binding	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	896	PtpAffx.17228.1.S1_at	CV239505	-	-	1e-93	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	7e-172	605	PtpAffx.17228.4.S1_a_at	BU821659	hypothetical protein	-	8e-7	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	9e-79	295	PtpAffx.17228.3.S1_at	AI162119	-	-	2e-2	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	8e-33	143	Ptp.4916.2.S1_s_at	CV270963	hypothetical protein	-	5e-84	At5g26751	ATSK11	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	5e-28	127	Ptp.4916.1.S1_s_at	CV270159	hypothetical protein	-	6e-165	At5g26751	ATSK11	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	2e-27	125	PtpAffx.211690.1.S1_at	pmrna22917	hypothetical protein	-	6e-147	At5g26751	ATSK11	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	7e-24	113	PtpAffx.147982.1.S1_s_at	BI136334	hypothetical protein	-	2e-115	At5g26751	ATSK11	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	3e-17	91	Ptp.335.1.S1_s_at	BU835355	hypothetical protein	-	2e-40	At5g26751	ATSK11	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	3e-17	91	Ptp.2709.1.A1_at	CV231401	hypothetical protein	-	2e-78	At5g26751	ATSK11	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	1e-160	567	Arabidopsis thaliana	At1g09840	837516	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.51	0	809	Glycine max	Gma.4037.1.S1_at	AW309605	-	-	2e-177	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	C.G.	S.X.	Please select
0.17	2e-31	137	Hordeum vulgare	Contig2294_at	Contig2294	-	-	1e-34	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please select
0.28	6e-47	190	Oryza sativa	Os03g0841800	AK070062.1	-	Shaggy-related protein kinase kappa (EC 2.7.1.-)(ASK-kappa) (AtK-1)	4e-74	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	6e-27	123	Triticum aestivum	Ta.20401.1.S1_at	BJ261212	Shaggy-like kinase	-	3e-35	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please select
0.44	0	787	Vitis vinifera	1615576_at	CB970198	-	-	1e-147	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	C.G.	S.X.	Please select
0.24	7e-43	174	Zea mays	ZmAffx.1.1.S1_at	AY722707.1	hypothetical LOC542518	-	5e-51	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage