CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.1672.2.A1_x_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 PtpAffx.1672.2.A1_x_at AF480619.1 - - 8e-24 At2g37040 pal1 (Phe ammonia lyase 1) S.X. H.G.
0.31 53.7 PtpAffx.37081.1.A1_at CV261932 chromatin remodeling complex subunit - 4e-39 At1g61140 EDA16 (embryo sac development arrest 16) S.X. H.G.
0.25 43.6 PtpAffx.57272.1.A1_at CV232571 - - 4e-12 At2g17990 - S.X. H.G.
0.15 25.3 PtpAffx.30758.1.S1_at CK091658 hypothetical protein - 2e+0 At2g03160 ASK19 (ARABIDOPSIS SKP1-LIKE 19) S.X. H.G.
0.15 25.3 PtpAffx.1454.1.S1_a_at CV255184 hypothetical protein - 4e-9 At3g08505 zinc finger (CCCH-type/C3HC4-type RING finger) family protein S.X. H.G.
0.12 19.6 Ptp.3320.1.S1_s_at DN492124 hypothetical protein - 6e-7 At1g69460 emp24/gp25L/p24 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.8 99.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6 97.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3 89.8 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 0 1100 Ptp.4730.1.A1_s_at CV267232 - - 1e-10 At3g53260 PAL2 C.G. S.X.
0.31 0 1011 PtpAffx.1672.3.A1_a_at CV271667 phenylalanine amonnia lyase - 1e-3 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.46 5e-69 264 Ptp.3185.1.S1_x_at AF480620.1 phenylalanine amonnia lyase - 2e-33 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.46 5e-69 264 Ptp.3185.1.S1_at AF480620.1 phenylalanine amonnia lyase - 2e-33 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.42 6e-56 220 PtpAffx.2272.1.S1_a_at AY372451.1 phenylalanine amonnia lyase - 1e-49 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.04 3e-36 155 PtpAffx.200846.1.S1_at pmrna1641 hypothetical protein - 1e-2 At5g28040 transcription regulator C.G. S.X.
0.10 1e-32 143 PtpAffx.128701.1.S1_s_at CX185749 phenylalanine amonnia lyase - 4e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.10 1e-32 143 PtpAffx.128701.1.S1_at CX185749 phenylalanine amonnia lyase - 4e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.04 5e-29 131 PtpAffx.204857.1.S1_at pmrna9601 hypothetical protein - 1e-2 At5g28040 transcription regulator C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 8e-24 113 Arabidopsis thaliana At2g37040 818280 pal1 (Phe ammonia lyase 1) encodes a protein similar to phenylalanine ammonia-lyase - - - C.G. S.X.
0.48 4e-122 440 Glycine max Gma.2266.1.S1_s_at BG839284 - - 2e-48 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.12 7e-4 46 Hordeum vulgare Contig1800_x_at Contig1800 - - 3e-17 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.08 8e-7 57 Oryza sativa Os02g0626400 BI807677 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.08 6e-3 44 Triticum aestivum Ta.9220.3.S1_x_at BJ278326 - - 1e-9 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.39 9e-138 490 Vitis vinifera 1610206_at CF511227 hypothetical protein LOC100241377 - 2e-29 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.04 4e-2 40 Zea mays Zm.15903.3.A1_at AY104679.1 hypothetical protein LOC100273579 - 4e-12 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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