Gene omics information

Query gene ID	PtpAffx.16691.2.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.16691.2.S1_a_at	CV272539	hypothetical protein	-	2e-8	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.24328.3.A1_a_at	CV242876	hypothetical protein	-	1e-10	At2g17770	ATBZIP27	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.907.1.A1_at	CV277484	hypothetical protein	-	4e-32	At4g19160	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.138367.1.S1_s_at	DN500998	hypothetical protein	-	9e-14	At3g03310	lecithin:cholesterol acyltransferase family protein / LACT family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.79594.1.S1_s_at	CK098523	hypothetical protein	-	2e-20	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.213041.1.S1_x_at	pmrna25522	hypothetical protein	-	4e-6	At4g25390	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
10.3	99.0	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.0	98.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-120	432	PtpAffx.203296.1.S1_at	pmrna6533	hypothetical protein	-	1e-11	At1g64350	SEH1H	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	5e-96	351	Ptp.583.1.S1_s_at	BP931375	hypothetical protein	-	1e-7	At1g64350	SEH1H	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	1e-7	57	PtpAffx.200379.1.S1_at	pmrna756	hypothetical protein	-	2e+0	At2g36030	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-7	57	Ptp.5565.1.S1_at	CK087680	hypothetical protein	-	3e-40	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	7e-6	52	PtpAffx.213057.1.S1_at	pmrna25551	hypothetical protein	-	4e-1	At3g24517	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.209249.1.S1_at	pmrna18285	AP2/ERF domain-containing transcription factor	-	6e-13	At5g05410	DREB2A	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.27012.1.S1_at	CV275738	hypothetical protein	-	2e-72	At5g20920	EIF2 BETA	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.27012.1.S1_s_at	CV275738	hypothetical protein	-	2e-72	At5g20920	EIF2 BETA	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-8	59	Arabidopsis thaliana	At5g51970	835272	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	5e-16	85	Glycine max	GmaAffx.78058.1.S1_at	BF423924	-	-	2e-14	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HA10D18u_x_at	HA10D18u	-	-	2e-1	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.04	9e+0	32	Oryza sativa	OsAffx.5741.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	TaAffx.84090.1.S1_at	CA645068	-	-	9e-20	At5g17920	ATMS1	C.G.	S.X.	Please select
0.21	1e-25	115	Vitis vinifera	1614939_at	BQ794995	-	-	3e-20	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.262.1.A1_s_at	AI670379	acidic ribosomal protein P3	-	3e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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