CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.164014.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 PtpAffx.164014.1.S1_at AJ777114 hypothetical protein - 3e-10 At2g35510 SRO1 (SIMILAR TO RCD ONE 1) S.X. H.G.
0.48 75.4 PtpAffx.85164.1.S1_at CV264750 hypothetical protein - 1e-2 At1g22140 unknown protein S.X. H.G.
0.37 62.3 PtpAffx.32103.1.S1_a_at CV246014 hypothetical protein - 4e-30 At4g01610 cathepsin B-like cysteine protease, putative S.X. H.G.
0.35 59.7 PtpAffx.24512.1.S1_at CV254685 hypothetical protein - 7e-41 At4g14950 unknown protein S.X. H.G.
0.32 55.2 PtpAffx.12425.1.S1_s_at CV228084 hypothetical protein - 7e-34 At2g46580 pyridoxine 5'-phosphate oxidase-related S.X. H.G.
0.32 55.2 PtpAffx.147.1.S1_at CV281912 hypothetical protein - 2e-20 At1g33780 unknown protein S.X. H.G.
0.26 45.2 PtpAffx.19752.1.S1_at CV255740 - - 4e-1 At5g03370 acylphosphatase family S.X. H.G.
0.22 38.3 PtpAffx.203886.1.S1_at pmrna7674 hypothetical protein - 3e-5 At1g28250 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.983.1.A1_at CX172753 hypothetical protein - 5e-10 At5g64180 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.61034.2.S1_at CN521157 hypothetical protein - 3e-9 At3g13225 protein binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 97.0 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.9 96.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9 95.1 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.6 94.5 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5 94.3 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1 93.2 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8 92.1 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 0 724 Ptp.1491.1.S1_s_at CK093025 - - 6e-8 At2g35510 SRO1 (SIMILAR TO RCD ONE 1) C.G. S.X.
0.27 1e-56 220 PtpAffx.143290.1.S1_at BI071353 hypothetical protein - 6e-1 At1g32230 RCD1 (RADICAL-INDUCED CELL DEATH1) C.G. S.X.
0.19 2e-49 196 Ptp.4961.1.S1_at CV260285 hypothetical protein - 4e-1 At1g32230 RCD1 (RADICAL-INDUCED CELL DEATH1) C.G. S.X.
0.19 8e-27 121 PtpAffx.85079.1.S1_at CV245771 hypothetical protein - 7e-3 At2g35510 SRO1 (SIMILAR TO RCD ONE 1) C.G. S.X.
0.03 4e-1 36 PtpAffx.213900.1.S1_s_at pmrna27102 hypothetical protein - 2e-6 At3g28630 - C.G. S.X.
0.02 4e-1 36 PtpAffx.207932.1.S1_at pmrna15741 hypothetical protein - 7e-94 At3g06550 - C.G. S.X.
0.03 4e-1 36 PtpAffx.133182.1.S1_at CX171237 hypothetical protein - 1e+0 At1g09700 HYL1 (HYPONASTIC LEAVES 1) C.G. S.X.
0.02 1e+0 34 PtpAffx.44091.1.A1_at CK090612 hypothetical protein - 1e-1 At1g14720 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2) C.G. S.X.
0.00 1e+0 34 PtpAffx.220018.1.S1_at pmrna36260 hypothetical protein - 4e-34 At4g17140 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-10 65 Arabidopsis thaliana At2g35510 818116 SRO1 (SIMILAR TO RCD ONE 1) Encodes a WWE domain-containing protein with 76% similarity to RCD1. The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. - - - C.G. S.X.
0.13 4e-10 65 Glycine max Gma.5346.1.S1_x_at BE210783 - - 5e-2 At2g35510 SRO1 (SIMILAR TO RCD ONE 1) C.G. S.X.
0.03 8e-3 40 Hordeum vulgare Contig4201_s_at Contig4201 - - 7e+0 At5g38420 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) C.G. S.X.
0.03 5e-1 36 Oryza sativa Os01g0847800 NM_190600.1 - Reductase-like protein 3e-2 At2g37770 aldo/keto reductase family protein C.G. S.X.
0.03 4e+0 32 Triticum aestivum TaAffx.58917.1.S1_at CA612554 - - 3e-6 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
0.48 2e-39 161 Vitis vinifera 1611078_a_at CF518728 hypothetical protein LOC100260925 - 1e-7 At1g32230 RCD1 (RADICAL-INDUCED CELL DEATH1) C.G. S.X.
0.07 5e-4 44 Zea mays Zm.8996.1.A1_at AY109834.1 - - 5e-2 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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