Gene omics information

Query gene ID	PtpAffx.16390.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.38	63.7	PtpAffx.16390.1.S1_at	DN496341	-	-	6e+0	At1g29620	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.41755.1.S1_at	DN499227	hypothetical protein	-	3e-2	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.1919.1.A1_at	CK092679	-	-	4e-2	At5g40180	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	Ptp.2232.1.S1_at	CK089340	-	-	5e+0	At4g11040	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.78103.1.A1_at	CF228445	-	-	3e+0	At4g02425	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.5	99.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.0	98.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.2	98.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	PtpAffx.93040.1.S1_at	CX169170	hypothetical protein	-	2e+0	At5g08550	ILP1 (increased level of polyploidy1-1D)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	PtpAffx.202453.1.S1_at	pmrna4911	hypothetical protein	-	6e+0	At4g26960	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	Ptp.7110.1.S1_s_at	CV270052	hypothetical protein	-	6e-6	At2g04240	XERICO	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	Ptp.7110.1.S1_at	CV270052	hypothetical protein	-	6e-6	At2g04240	XERICO	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e+0	30	PtpAffx.8033.3.S1_a_at	CV233684	hypothetical protein	-	3e-57	At5g12370	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e+0	30	PtpAffx.208646.1.S1_at	pmrna17165	hypothetical protein	-	2e-147	At1g13170	ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e+0	30	PtpAffx.205256.1.S1_at	pmrna10422	oligopeptide transporter OPT family	-	1e-15	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e+0	30	PtpAffx.203137.1.S1_at	pmrna6221	hypothetical protein	-	8e-25	At1g61590	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e+0	30	PtpAffx.147676.1.A1_at	CV230317	hypothetical protein	-	3e-32	At4g30600	signal recognition particle receptor alpha subunit family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e+0	30	Arabidopsis thaliana	At1g29620	839839	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e+0	30	Glycine max	Gma.17584.1.S1_at	BG046634	MYB transcription factor MYB118	-	2e-1	At5g02840	LCL1 (LHY/CCA1-like 1)	C.G.	S.X.	Please select
0.04	1e+1	28	Hordeum vulgare	HV_CEa0002N08r2_at	HV_CEa0002N08r2	-	-	6e-24	At3g25860	LTA2	C.G.	S.X.	Please select
0.02	3e+0	32	Oryza sativa	Os08g0207600	AK073315.1	-	GTP-binding protein ERG	4e-6	At1g30960	GTP-binding protein (ERG)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e+0	30	Triticum aestivum	TaAffx.65598.1.S1_at	BJ236360	-	-	4e+0	At3g27270	-	C.G.	S.X.	Please select
0.04	8e+0	28	Vitis vinifera	1616377_at	CF609106	hypothetical protein LOC100262559	-	4e+0	At1g27385	unknown protein	C.G.	S.X.	Please select
0.04	1e+1	28	Zea mays	ZmAffx.667.1.A1_at	AI734359	tetracycline transporter protein	-	3e+0	At3g42970	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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