Gene omics information

Query gene ID PtpAffx.163113.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5582.2PtpAffx.163113.1.S1_s_atCX182719hypothetical protein-2e-4At3g03330short-chain dehydrogenase/reductase (SDR) family proteinS.X.H.G.
0.8096.0PtpAffx.93043.1.S1_atCX178086hypothetical protein-4e-4At1g29800phosphoinositide binding / zinc ion bindingS.X.H.G.
0.8096.0PtpAffx.23095.1.S1_atCX177404hypothetical protein-1e-3At3g02540RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)S.X.H.G.
0.7393.6PtpAffx.72383.1.S1_atBU888356--2e+0At4g24265unknown proteinS.X.H.G.
0.7192.6Ptp.4562.1.S1_s_atCV261348hypothetical protein-1e-20At5g65940CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)S.X.H.G.
0.5683.9PtpAffx.95687.1.A1_atDN496546hypothetical protein-4e-4At2g25010unknown proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.092.9GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.691.3GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue series
2.289.3GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.289.3GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.289.3GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.188.6GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.188.6GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.188.6GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.088.0GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.088.0GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.510886Ptp.8010.1.A1_s_atCV253864hypothetical protein-4e-21At3g03330short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.012e-240PtpAffx.203114.1.S1_s_atpmrna6172DNA methyltransferase-9e-23At4g19020CMT2 (chromomethylase 2)C.G.S.X.
0.013e-136PtpAffx.205865.1.S1_atpmrna11627hypothetical protein-1e-3At2g17110unknown proteinC.G.S.X.
0.041e+034PtpAffx.73999.1.S1_atBU870918--2e+0At5g03995unknown proteinC.G.S.X.
0.031e+034PtpAffx.216947.1.S1_atpmrna32026hypothetical protein-5e+0At5g49120senescence-associated protein-relatedC.G.S.X.
0.011e+034PtpAffx.213046.1.S1_atpmrna25532hypothetical protein-8e-8At4g25430unknown proteinC.G.S.X.
0.011e+034PtpAffx.200411.1.S1_s_atpmrna829hypothetical protein-1e-160At5g41370XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1)C.G.S.X.
0.021e+034PtpAffx.14707.1.A1_atDN488236hypothetical protein-6e-7At3g53780rhomboid family proteinC.G.S.X.
0.031e+034Ptp.6583.1.S1_x_atCV252067hypothetical protein-2e-17At1g66240ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.142e-446Arabidopsis thalianaAt3g03330821281short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, plasma membrane;BOMFPAV---C.G.S.X.
0.273e-23109Glycine maxGma.980.1.S1_atBE346246--3e-23At3g03330short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.071e-136Hordeum vulgareContig7379_atContig7379--1e-11At3g03330short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.062e-344Oryza sativaOs11g0265400AK102327.1-Short-chain dehydrogenase/reductase SDR familyprotein5e-8At3g03330short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.041e+034Triticum aestivumTa.25086.1.A1_atBQ170118--9e-1At5g52740heavy-metal-associated domain-containing proteinC.G.S.X.
0.125e-650Vitis vinifera1618639_atCB348187hypothetical protein LOC100247868-4e+0At5g53742-C.G.S.X.
0.034e-134Zea maysZm.5851.2.A1_atBM267859hypothetical protein LOC100278946-4e-1At3g28220meprin and TRAF homology domain-containing protein / MATH domain-containing proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage