Gene omics information

Query gene ID PtpAffx.162331.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.162331.1.S1_atCA821362--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)S.X.H.G.
0.9199.2PtpAffx.209537.1.S1_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinS.X.H.G.
0.8096.0PtpAffx.200185.1.S1_atpmrna342hypothetical protein-8e-4At2g44450BGLU15 (BETA GLUCOSIDASE 15)S.X.H.G.
0.7393.6PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)S.X.H.G.
0.7393.6PtpAffx.127059.1.A1_atCV258719hypothetical protein-1e-4At1g66270BGLU21S.X.H.G.
0.4067.0PtpAffx.212416.1.S1_atpmrna24321hypothetical protein-5e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
84.4100.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
4.295.6GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
2.791.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
1.583.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.355.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.355.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
0.249.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
0.249.7GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.249.7GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.142.9GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.739e-166583PtpAffx.162331.2.S1_atAJ780051--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)C.G.S.X.
0.799e-132470Ptp.6792.1.S1_atCA928793--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)C.G.S.X.
0.022e+034PtpAffx.96568.1.S1_s_atCV236193UDP-galactose:flavonol 3-o-galactosyltransferase-6e-10At5g17050UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)C.G.S.X.
0.022e+034PtpAffx.8961.1.S1_atCV257458--7e-40At1g32440PKp3 (plastidial pyruvate kinase 3)C.G.S.X.
0.032e+034PtpAffx.8091.1.A1_atBU888499--8e-2At3g51260PAD1 (20s proteasome alpha subunit pad1)C.G.S.X.
0.042e+034PtpAffx.8091.3.S1_atCF229967--4e+0At5g38060unknown proteinC.G.S.X.
0.042e+034PtpAffx.8091.2.S1_atCV271973--9e-1At3g47675unknown proteinC.G.S.X.
0.032e+034PtpAffx.80578.1.A1_atBP934788hypothetical protein-6e-9At1g06690aldo/keto reductase family proteinC.G.S.X.
0.042e+034PtpAffx.8091.2.S1_s_atCV271973hypothetical protein-4e+0At4g10250ATHSP22.0C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+034Arabidopsis thalianaAt4g11640826769ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases.---C.G.S.X.
0.035e-136Glycine maxGmaAffx.69371.1.A1_atCD408456--2e-1At2g28950ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)C.G.S.X.
0.033e+032Hordeum vulgareContig21924_atContig21924--3e-1At5g55970zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.041e+132Oryza sativaOsAffx.12902.1.S1_at---0C.G.S.X.
0.035e+032Triticum aestivumTaAffx.23325.1.S1_atCA736564--5e-1At5g01390DNAJ heat shock protein, putativeC.G.S.X.
0.042e+032Vitis vinifera1613968_atCB972295--1e-1At1g70470unknown proteinC.G.S.X.
0.022e+032Zea maysZm.4376.1.A1_atAI712238hypothetical protein LOC100275363-2e+0At2g23830vesicle-associated membrane protein, putative / VAMP, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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