Gene omics information

Query gene ID PtpAffx.16175.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4673.7PtpAffx.16175.1.S1_atDN496213--9e-1At3g48209-S.X.H.G.
0.6187.0PtpAffx.207643.1.S1_atpmrna15162hypothetical protein-3e-1At3g57390AGL18S.X.H.G.
0.3661.6PtpAffx.202991.1.S1_atpmrna5919hypothetical protein-6e-1At3g04510LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)S.X.H.G.
0.3559.7PtpAffx.221219.1.S1_atpmrna37938hypothetical protein-3e-1At1g15680F-box family proteinS.X.H.G.
0.3153.7PtpAffx.212939.1.S1_atpmrna25319hypothetical protein-2e-8At5g07380unknown proteinS.X.H.G.
0.2850.5PtpAffx.27724.1.S1_atBU873611--2e-1At1g03140splicing factor Prp18 family proteinS.X.H.G.
0.2747.1PtpAffx.9819.1.S1_atDN497878--9e-1At5g35737unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.299.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
7.798.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.597.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
4.395.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
3.494.0GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.691.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
2.691.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
2.590.9GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue series
2.490.4GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.246e-163573PtpAffx.216382.1.S1_atpmrna31125hypothetical protein-3e-7At5g49960binding / catalyticC.G.S.X.
0.222e-91335PtpAffx.212441.1.S1_atpmrna24377hypothetical protein-4e-6At5g49960binding / catalyticC.G.S.X.
0.012e-240Ptp.703.1.S1_atAY935501.1hypothetical protein-8e-21At1g58370RXF12C.G.S.X.
0.018e-238PtpAffx.225609.1.S1_atpmrna45069hypothetical protein-5e-3At5g62760nuclear protein ZAP-relatedC.G.S.X.
0.018e-238PtpAffx.225609.1.S1_x_atpmrna45069hypothetical protein-5e-3At5g62760nuclear protein ZAP-relatedC.G.S.X.
0.018e-238PtpAffx.213645.1.S1_atpmrna26652hypothetical protein-2e-61At1g80930MIF4G domain-containing protein / MA3 domain-containing proteinC.G.S.X.
0.018e-238PtpAffx.213645.1.S1_s_atpmrna26652hypothetical protein-2e-61At1g80930MIF4G domain-containing protein / MA3 domain-containing proteinC.G.S.X.
0.033e-136PtpAffx.200881.1.S1_atpmrna1727hypothetical protein-1e-1At4g28840unknown proteinC.G.S.X.
0.031e+034PtpAffx.219716.1.S1_atpmrna35720hypothetical protein-2e+0At3g06040ribosomal protein L12 family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.079e-134Arabidopsis thalianaAt3g482095008076-Encodes a Plant thionin family protein---C.G.S.X.
0.043e-136Glycine maxHgAffx.14012.1.S1_atCB373921--7e-1At5g06240emb2735 (embryo defective 2735)C.G.S.X.
0.054e-134Hordeum vulgareHF01J12w_s_atHF01J12w--4e-1At2g32310-C.G.S.X.
0.022e-344Oryza sativaOs03g0843600AK068216.1-DMI1 protein7e-3At5g49960binding / catalyticC.G.S.X.
0.049e-134Triticum aestivumTaAffx.7847.1.S1_atCA647073--3e+0At1g42710-C.G.S.X.
0.044e+030Vitis vinifera1621834_atBQ794561hypothetical protein LOC100254175-2e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)C.G.S.X.
0.036e+030Zea maysZm.8862.1.A1_atBM268559--3e-1At4g14110COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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