Gene omics information

Query gene ID	PtpAffx.16159.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	91.5	PtpAffx.16159.1.S1_at	DN496713	-	-	4e-3	At2g46505	SDH4	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.213013.1.S1_at	pmrna25444	hypothetical protein	-	7e-1	At1g02590	aldehyde oxidase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.140892.1.A1_at	CV241251	-	-	6e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.221417.1.S1_at	pmrna38299	hypothetical protein	-	7e-1	At5g20820	auxin-responsive protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.4211.1.S1_at	BU826521	-	-	9e-39	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.200437.1.S1_at	pmrna878	hypothetical protein	-	4e-4	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.57092.1.A1_at	CV239044	-	-	9e-2	At2g39270	adenylate kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.212507.1.S1_x_at	pmrna24495	-	-	7e+0	At5g56170	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.203181.1.S1_s_at	pmrna6307	cytochrome P450 /// cytochrome P450	-	5e-2	At2g45570	CYP76C2	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.220701.1.S1_at	pmrna37114	hypothetical protein	-	8e+0	At2g28105	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.1	99.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
12.3	99.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-3	44	PtpAffx.212919.1.S1_s_at	pmrna25273	hypothetical protein	-	2e-16	At5g50915	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-3	44	PtpAffx.212919.1.S1_at	pmrna25273	hypothetical protein	-	2e-16	At5g50915	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-3	44	PtpAffx.163828.1.S1_s_at	DN498610	hypothetical protein	-	2e-3	At1g72790	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-3	42	PtpAffx.210148.1.S1_at	pmrna19999	hypothetical protein	-	1e-6	At3g25690	CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-3	42	PtpAffx.205091.1.S1_at	pmrna10087	hypothetical protein	-	3e-57	At2g27900	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-2	40	PtpAffx.219717.1.S1_at	pmrna35721	SAUR family protein	-	5e-5	At5g20820	auxin-responsive protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e-2	40	PtpAffx.207398.1.S1_at	pmrna14680	hypothetical protein	-	2e-2	At3g45160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	40	PtpAffx.159337.1.A1_at	CV277146	hypothetical protein	-	4e-1	At1g20990	DC1 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-2	38	PtpAffx.98729.1.S1_s_at	CV243367	hypothetical protein	-	2e-39	At5g19900	PRLI-interacting factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-3	42	Arabidopsis thaliana	At2g46505	819261	SDH4	Encodes succinate dehydrogenase ,a component of mitochondrial respiratory complex II. Nuclear encoded gene which is imported into the mitochondrion.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e-5	48	Glycine max	Gma.16817.1.S1_s_at	AF169205.1	glycine-rich RNA-binding protein	-	2e-5	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.04	8e-3	40	Hordeum vulgare	Contig3859_s_at	Contig3859	-	-	3e-1	At4g10970	unknown protein	C.G.	S.X.	Please select
0.07	3e-5	50	Oryza sativa	Os01g0681000	AK099862.1	-	Protein of unknown function DUF1298 domaincontaining protein	4e-3	At1g20900	ESC (ESCAROLA)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-3	42	Triticum aestivum	TaAffx.75796.1.S1_at	CA706782	-	-	4e+0	At4g32490	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.08	3e-1	34	Vitis vinifera	1620940_at	CF201899.1	-	-	2e+1	At5g66990	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.05	3e-2	38	Zea mays	Zm.16508.3.A1_at	AI739900	ribosomal protein L39	-	4e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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