Gene omics information

Query gene ID PtpAffx.161406.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.3964.6PtpAffx.161406.1.S1_atCN192640hypothetical protein-3e-7At3g26935zinc finger (DHHC type) family proteinS.X.H.G.
0.3559.7PtpAffx.3132.1.A1_atCV243604hypothetical protein-1e-4At3g54826-S.X.H.G.
0.2747.1PtpAffx.70051.1.A1_atCV233658hypothetical protein-1e+1Atcg00150-S.X.H.G.
0.1321.6PtpAffx.210852.1.S1_atpmrna21313hypothetical protein-8e-10At1g56440serine/threonine protein phosphatase-relatedS.X.H.G.
0.1118.1PtpAffx.80624.1.A1_atBP930343hypothetical protein-1e-9At5g59560SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)S.X.H.G.
0.046.9PtpAffx.36571.1.S1_s_atCX172486hypothetical protein-2e+0At3g17930unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.598.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.797.3GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.395.8GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.894.9GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.494.0GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.494.0GSM372045Clone1979_LPI5_N+_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.092.9GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.092.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.088.0GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.886.4GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.114e-446PtpAffx.223443.1.S1_atpmrna41456hypothetical protein-4e-76At3g26935zinc finger (DHHC type) family proteinC.G.S.X.
0.013e-136PtpAffx.221723.1.S1_atpmrna38755hypothetical protein-3e-1At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)C.G.S.X.
0.033e-136PtpAffx.218380.1.S1_s_atpmrna33975hypothetical protein-2e+0At1g30814-C.G.S.X.
0.033e-136PtpAffx.218380.1.S1_atpmrna33975hypothetical protein-2e+0At1g30814-C.G.S.X.
0.023e-136PtpAffx.202835.1.S1_s_atpmrna5618hypothetical protein-2e-1At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)C.G.S.X.
0.033e-136PtpAffx.147338.1.A1_a_atCV241411hypothetical protein-9e-33At3g08620KH domain-containing proteinC.G.S.X.
0.031e+034PtpAffx.21767.3.A1_atCV256188hypothetical protein-3e-5At4g15140unknown proteinC.G.S.X.
0.021e+034PtpAffx.201744.1.S1_atpmrna3463hypothetical protein-3e+0At5g10780-C.G.S.X.
0.031e+034PtpAffx.139572.1.S1_s_atCX178213hypothetical protein-1e+0At3g47470LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-756Arabidopsis thalianaAt3g26935822311zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFP---C.G.S.X.
0.171e+034Glycine maxGmaAffx.86603.1.S1_atAW507560--4e-9At3g26935zinc finger (DHHC type) family proteinC.G.S.X.
0.042e+032Hordeum vulgareHF23D07r_x_atHF23D07r--3e+0At1g68185ubiquitin-relatedC.G.S.X.
0.061e-448Oryza sativaOs01g0925300AK103046.1-Zn-finger, DHHC type domain containing protein6e-5At3g48760zinc finger (DHHC type) family proteinC.G.S.X.
0.067e-548Triticum aestivumTaAffx.120640.1.S1_atBJ211881--2e-10At2g40990zinc ion bindingC.G.S.X.
0.041e+032Vitis vinifera1622508_atCB341480--3e-7At3g23030IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2)C.G.S.X.
0.034e-134Zea maysZm.12164.1.A1_atCO521714hypothetical protein LOC100193480-1e-1At5g60490FLA12C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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