CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.16082.2.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.16082.2.S1_a_at CV232704 hypothetical protein - 2e-11 At5g13260 unknown protein S.X. H.G.
0.60 86.0 Ptp.3059.1.A1_s_at CV227410 hypothetical protein - 5e-13 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) S.X. H.G.
0.38 63.7 PtpAffx.95211.1.A1_a_at CB239540 hypothetical protein - 4e+0 At2g41082 unknown protein S.X. H.G.
0.32 55.2 Ptp.2370.1.A1_at CV228969 hypothetical protein - 2e-77 At5g49460 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) S.X. H.G.
0.31 53.7 PtpAffx.160058.1.A1_at CV230119 hypothetical protein - 7e-3 At4g00905 - S.X. H.G.
0.17 29.1 Ptp.5538.1.S1_s_at AI162588 hypothetical protein - 1e-31 At5g50370 adenylate kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.7 98.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.5 98.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 2e-117 422 PtpAffx.16082.1.S1_at CV227516 hypothetical protein - 2e-10 At5g13260 unknown protein C.G. S.X.
0.21 2e-21 103 PtpAffx.212921.1.S1_s_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
0.21 2e-21 103 PtpAffx.212921.1.S1_at pmrna25278 hypothetical protein - 4e-27 At3g48860 unknown protein C.G. S.X.
0.13 3e-11 69 PtpAffx.15727.2.S1_at CV261606 hypothetical protein - 1e-4 At5g23700 unknown protein C.G. S.X.
0.13 2e-6 54 PtpAffx.15727.1.S1_at CK094411 - - 3e-1 At5g23700 unknown protein C.G. S.X.
0.01 4e-1 36 PtpAffx.222521.1.S1_s_at pmrna40018 chromatin remodeling complex subunit - 3e+0 At5g43175 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 4e-1 36 PtpAffx.222521.1.S1_at pmrna40018 chromatin remodeling complex subunit - 3e+0 At5g43175 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 4e-1 36 PtpAffx.214831.1.S1_at pmrna28708 hypothetical protein - 2e-2 At3g15390 SDE5 (silencing defective 5) C.G. S.X.
0.02 4e-1 36 PtpAffx.210413.1.S1_s_at pmrna20461 hypothetical protein - 5e-11 At1g17970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-11 69 Arabidopsis thaliana At5g13260 831167 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFOPBAV - - - C.G. S.X.
0.50 7e-40 165 Glycine max Gma.8638.1.A1_at CA783239 - - 5e-22 At5g13260 unknown protein C.G. S.X.
0.19 3e-9 61 Hordeum vulgare Contig14969_at Contig14969 - - 9e-2 At3g48860 unknown protein C.G. S.X.
0.08 2e-10 67 Oryza sativa Os01g0928100 AK120714.1 - Conserved hypothetical protein 5e-12 At3g48860 unknown protein C.G. S.X.
0.20 1e-6 54 Triticum aestivum Ta.9619.1.S1_a_at CD908424 - - 8e-10 At3g48860 unknown protein C.G. S.X.
0.29 7e-52 202 Vitis vinifera 1617837_at CB972171 hypothetical protein LOC100260846 - 1e-12 At5g13260 unknown protein C.G. S.X.
0.03 8e+0 30 Zea mays Zm.7768.1.A1_s_at BG836144 hypothetical protein LOC100276601 - 4e-3 At5g23950 C2 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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