CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.160277.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.160277.1.A1_at CV262870 hypothetical protein - 3e+0 At4g27930 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.224715.1.S1_s_at pmrna43527 hypothetical protein - 4e-25 At1g11300 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding S.X. H.G.
0.44 71.9 PtpAffx.953.2.A1_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein S.X. H.G.
0.44 71.9 PtpAffx.95587.1.A1_at CV240701 hypothetical protein - 1e+0 At5g53280 PDV1 (PLASTID DIVISION1) S.X. H.G.
0.33 57.5 PtpAffx.214372.1.S1_at pmrna27964 hypothetical protein - 2e+0 At3g28140 calmodulin-binding protein S.X. H.G.
0.27 47.1 PtpAffx.953.2.A1_a_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.2 100.0 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
25.2 99.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.2 98.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.6 97.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2 89.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.2 79.6 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.2 79.6 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.2 79.6 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.9 74.2 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 2e-110 398 Ptp.6812.1.S1_at DN496118 hypothetical protein - 1e+0 At5g03500 transcription coactivator C.G. S.X.
0.26 3e-32 139 PtpAffx.146934.1.A1_at CV271907 hypothetical protein - 9e-1 At2g24800 peroxidase, putative C.G. S.X.
0.07 2e-2 40 PtpAffx.153303.1.A1_at CV260981 hypothetical protein - 3e-1 At4g27580 unknown protein C.G. S.X.
0.06 3e-1 36 PtpAffx.219195.1.S1_at pmrna35047 hypothetical protein - 1e+0 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.02 5e+0 32 PtpAffx.9327.3.A1_a_at CK095597 hypothetical protein - 6e-25 At1g56450 PBG1 C.G. S.X.
0.03 5e+0 32 PtpAffx.218118.1.S1_at pmrna33646 hypothetical protein - 4e-1 At5g41560 - C.G. S.X.
0.02 5e+0 32 PtpAffx.217219.1.S1_at pmrna32395 hypothetical protein - 3e-3 At1g09790 COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR) C.G. S.X.
0.04 5e+0 32 PtpAffx.215917.1.S1_at pmrna30387 hypothetical protein - 8e-1 At4g07380 unknown protein C.G. S.X.
0.03 5e+0 32 PtpAffx.210984.1.S1_at pmrna21574 hypothetical protein - 2e-14 At3g22780 TSO1 (CHINESE FOR 'UGLY') C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At4g27930 828906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.10 2e-2 40 Glycine max Gma.8080.1.S1_at AW310788 - - 9e-1 At2g47170 ARF1A1C C.G. S.X.
0.04 7e+0 30 Hordeum vulgare HU13F23r_at HU13F23r - - 2e+0 At3g09510 nucleic acid binding C.G. S.X.
0.04 7e+0 32 Oryza sativa OsAffx.31178.1.S1_at - - - 0 C.G. S.X.
0.05 4e+0 32 Triticum aestivum TaAffx.11101.1.S1_at BQ609676 - - 6e-1 At2g39470 PPL2 (PsbP-like protein 2) C.G. S.X.
0.06 4e-3 40 Vitis vinifera 1608720_at CF403625 - - 2e-1 At1g01380 ETC1 (ENHANCER OF TRY AND CPC 1) C.G. S.X.
0.03 2e+1 28 Zea mays ZmAffx.726.1.A1_at AI739956 - - 3e+0 At2g32360 ubiquitin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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