CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.159657.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.159657.1.A1_at CV264120 hypothetical protein - 4e-35 At5g26600 catalytic/ pyridoxal phosphate binding S.X. H.G.
0.57 84.2 PtpAffx.156340.1.S1_at CX657667 hypothetical protein - 1e+0 At2g26520 unknown protein S.X. H.G.
0.55 82.2 PtpAffx.221308.1.S1_at pmrna38101 hypothetical protein - 1e-21 At1g72000 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative S.X. H.G.
0.40 67.0 PtpAffx.219045.1.S1_s_at pmrna34843 hypothetical protein - 6e-54 At3g16630 KINESIN-13A S.X. H.G.
0.25 43.6 Ptp.6307.1.S1_at CV240855 hypothetical protein - 9e-6 At5g16510 reversibly glycosylated polypeptide, putative S.X. H.G.
0.25 43.6 PtpAffx.40192.1.A1_s_at CV264380 hypothetical protein - 2e+0 At3g17020 universal stress protein (USP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 7e-13 75 PtpAffx.109774.1.S1_at CK095148 hypothetical protein - 7e-6 At5g26600 catalytic/ pyridoxal phosphate binding C.G. S.X.
0.01 1e-1 38 PtpAffx.221264.1.S1_s_at pmrna38022 hypothetical protein - 1e-6 At2g42370 unknown protein C.G. S.X.
0.02 1e-1 38 PtpAffx.213968.1.S1_at pmrna27220 hypothetical protein - 5e-1 At5g64343 CPuORF38 (Conserved peptide upstream open reading frame 38) C.G. S.X.
0.02 1e-1 38 PtpAffx.213968.1.S1_x_at pmrna27220 hypothetical protein - 5e-1 At5g64343 CPuORF38 (Conserved peptide upstream open reading frame 38) C.G. S.X.
0.02 6e-1 36 PtpAffx.225716.1.S1_at pmrna45275 hypothetical protein - 1e-4 At3g55550 lectin protein kinase, putative C.G. S.X.
0.01 6e-1 36 PtpAffx.221322.1.S1_at pmrna38127 hypothetical protein - 2e-109 At1g72090 radical SAM domain-containing protein / TRAM domain-containing protein C.G. S.X.
0.01 6e-1 36 PtpAffx.210996.1.S1_at pmrna21599 hypothetical protein - 1e-67 At3g04740 SWP (STRUWWELPETER) C.G. S.X.
0.02 6e-1 36 Ptp.965.1.S1_at CV242904 hypothetical protein - 4e-2 At2g25052 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.7931.1.A1_a_at CV262721 hypothetical protein - 8e-50 At2g36530 LOS2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-35 149 Arabidopsis thaliana At5g26600 832730 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:metabolic process;C:chloroplast;BOFAPMV - - - C.G. S.X.
0.11 1e-11 71 Glycine max GmaAffx.55914.1.S1_at BQ611081 - - 8e-1 At3g62130 epimerase-related C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig21829_at Contig21829 - - 1e-2 At2g21727 - C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.6251.1.S1_at - - - 0 C.G. S.X.
0.05 4e-1 36 Triticum aestivum Ta.27987.1.S1_a_at CD927641 - - 2e+0 At2g01100 unknown protein C.G. S.X.
0.04 1e-4 46 Vitis vinifera 1614264_a_at BQ797868 similar to catalytic/ pyridoxal phosphate binding - 6e-2 At5g26630 MADS-box protein (AGL35) C.G. S.X.
0.04 2e-4 46 Zea mays Zm.15605.1.S1_at CA402349 isopenicillin N epimerase - 2e-2 At3g62130 epimerase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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