Gene omics information

Query gene ID	PtpAffx.158812.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	94.3	PtpAffx.158812.1.S1_s_at	CX182269	hypothetical protein	-	4e-1	At3g06520	agenet domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.208741.1.S1_at	pmrna17332	-	-	5e-21	At3g23020	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.160864.1.S1_s_at	CV130607	hypothetical protein	-	6e-41	At2g25140	CLPB4 (CASEIN LYTIC PROTEINASE B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.4470.2.S1_at	CV242638	hypothetical protein	-	3e-2	At4g24210	SLY1 (SLEEPY1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.61990.1.S1_at	DN484016	hypothetical protein	-	2e-42	At2g31840	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.202113.1.S1_at	pmrna4224	hypothetical protein	-	4e-15	At2g44760	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.12794.1.S1_a_at	BU893547	hypothetical protein	-	8e-28	At3g63310	glutamate binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.207101.1.S1_at	pmrna14077	hypothetical protein	-	6e-38	At4g39960	DNAJ heat shock family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.76148.1.A1_at	CV242858	hypothetical protein	-	3e-1	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.146088.1.S1_at	DN500453	hypothetical protein	-	2e-20	At3g10350	anion-transporting ATPase family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	96.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	779	PtpAffx.201837.1.S1_at	pmrna3659	hypothetical protein	-	2e-4	At1g77250	PHD finger family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	1e-63	244	PtpAffx.205564.1.S1_at	pmrna10999	hypothetical protein	-	3e-9	At1g77250	PHD finger family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.12873.1.A1_at	CV242873	light harvesting-like protein 3	-	2e-52	At5g47110	lil3 protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.225360.1.S1_s_at	pmrna44658	hypothetical protein	-	4e-1	At3g47090	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.225361.1.S1_at	pmrna44659	hypothetical protein	-	2e-2	At5g20480	EFR (EF-TU RECEPTOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.225360.1.S1_at	pmrna44658	-	-	4e-1	At3g47090	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.88808.1.A1_at	CV251825	-	-	5e+0	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.68213.1.S1_s_at	CX656626	hypothetical protein	-	3e-4	At1g01110	IQD18 (IQ-domain 18)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.225745.1.S1_at	pmrna45315	-	-	7e-5	At1g16260	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	36	Arabidopsis thaliana	At3g06520	819830	agenet domain-containing protein	F:RNA binding;P:unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.65547.1.S1_at	BE607636	-	-	6e-24	At5g61580	PFK4 (PHOSPHOFRUCTOKINASE 4)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEl0012C14r2_x_at	HVSMEl0012C14r2	-	-	2e+0	At1g05760	RTM1 (restricted tev movement 1)	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os04g0234600	AK119209.1	-	Sedoheptulose-1,7-bisphosphatase, chloroplastprecursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase)(SBPASE) (SED(1,7)P2ASE)	6e-51	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Triticum aestivum	TaAffx.111478.1.S1_at	CA639855	-	-	4e+0	At3g29195	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1620648_at	CD008794	hypothetical protein LOC100256959	-	1e+0	At4g27380	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.4191.2.A1_at	BQ547780	-	-	1e-7	At1g36070	WD-40 repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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