Gene omics information

Query gene ID	PtpAffx.158573.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.158573.1.S1_at	CX658654	hypothetical protein	-	1e-3	At5g17790	VAR3 (VARIEGATED 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.207082.1.S1_at	pmrna14042	hypothetical protein	-	2e-44	At5g08740	NDC1 (NAD(P)H dehydrogenase C1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.213666.1.S1_at	pmrna26686	hypothetical protein	-	2e-4	At4g38380	antiporter/ drug transporter	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.19435.1.S1_a_at	AJ767194	hypothetical protein	-	2e-8	At1g21350	antioxidant/ oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.200407.1.S1_s_at	pmrna819	hypothetical protein	-	2e-31	At1g28140	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.201326.1.S1_s_at	pmrna2629	hypothetical protein	-	4e-27	At3g15030	TCP4 (TCP family transcription factor 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.221342.1.S1_at	pmrna38177	hypothetical protein	-	1e-20	At4g10000	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.55477.1.S1_s_at	CX186924	hypothetical protein	-	3e-51	At3g24430	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.7	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.8	97.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3	96.9	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1	96.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5	96.1	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5	96.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	4e-60	232	Ptp.1746.1.A1_at	CV236183	hypothetical protein	-	2e+0	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.210618.1.S1_at	pmrna20828	hypothetical protein	-	1e-9	At3g48430	REF6 (RELATIVE OF EARLY FLOWERING 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.203906.1.S1_at	pmrna7716	hypothetical protein	-	1e-5	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.77158.2.S1_a_at	AJ772078	shikimate kinase	-	1e-16	At3g26900	shikimate kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.209267.1.S1_at	pmrna18311	hypothetical protein	-	4e-3	At1g71020	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.207774.1.S1_at	pmrna15459	hypothetical protein	-	7e-5	At1g23030	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.203022.1.S1_at	pmrna5982	hypothetical protein	-	1e-8	At4g17330	ATG2484-1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.6311.2.S1_at	CV252162	-	-	3e-94	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.4828.1.S1_at	BU812340	hypothetical protein	-	2e-34	At5g67030	ABA1 (ABA DEFICIENT 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-3	44	Arabidopsis thaliana	At5g17790	831647	VAR3 (VARIEGATED 3)	Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.75107.1.A1_at	CD410272	-	-	7e-1	At5g37240	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HI04I02u_at	HI04I02u	-	-	5e+0	At5g38480	GRF3 (GENERAL REGULATORY FACTOR 3)	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	Os01g0567100	9629.m03670	-	-	8e-1	At5g26840	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.66055.1.S1_at	BJ210143	-	-	2e+0	At1g80700	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1608951_at	CF515796	-	-	9e-1	At5g46090	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zea mays	Zm.11825.1.S1_at	BM381071	hypothetical protein LOC100276984	-	3e-2	At5g65650	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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