CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.157405.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.157405.1.S1_at CF233029 hypothetical protein - 2e-2 At4g09467 - S.X. H.G.
0.48 75.4 PtpAffx.72354.1.S1_at BU889551 hypothetical protein - 3e+0 At4g14104 unknown protein S.X. H.G.
0.44 71.9 Ptp.5711.1.S1_at AJ849329.1 auxin efflux carrier component - 2e-7 At1g73590 PIN1 (PIN-FORMED 1) S.X. H.G.
0.40 67.0 Ptp.44.1.A1_at CK088023 hypothetical protein - 8e-15 At5g10970 zinc finger (C2H2 type) family protein S.X. H.G.
0.40 67.0 PtpAffx.28062.1.S1_at BU823365 - - 4e-1 At3g28007 nodulin MtN3 family protein S.X. H.G.
0.33 57.5 Ptp.6069.1.S1_a_at CK093943 GH3 family protein - 2e-7 At2g46370 JAR1 (JASMONATE RESISTANT 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.2 98.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.4 98.2 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.1 98.1 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.7 97.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.71 7e-133 474 PtpAffx.7604.6.A1_at CV275490 hypothetical protein - 4e-1 At3g52560 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) C.G. S.X.
0.60 5e-81 301 PtpAffx.7604.2.A1_at CV232190 - - 4e-1 At1g70350 unknown protein C.G. S.X.
0.61 5e-81 301 PtpAffx.7604.3.S1_at CF228086 - - 4e-1 At1g70350 unknown protein C.G. S.X.
0.65 3e-76 286 PtpAffx.7604.1.A1_at CV257623 hypothetical protein - 8e-2 At1g70350 unknown protein C.G. S.X.
0.54 7e-65 248 PtpAffx.7604.7.A1_at CV261169 - - 2e+0 At1g54217 Expressed protein C.G. S.X.
0.54 7e-65 248 PtpAffx.7604.7.A1_a_at CV261169 - - 2e+0 At1g54217 Expressed protein C.G. S.X.
0.19 4e-11 69 PtpAffx.12675.2.A1_at CV227850 - - 1e+0 At1g69510 - C.G. S.X.
0.19 4e-11 69 PtpAffx.12675.2.A1_a_at CV227850 - - 1e+0 At1g69510 - C.G. S.X.
0.07 9e-6 52 PtpAffx.7667.1.S1_a_at CF235125 - - 2e+0 At4g26170 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 40 Arabidopsis thaliana At4g09467 6240782 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.58437.1.S1_at BE802327 - - 2e-1 At1g49520 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HS06J22u_s_at HS06J22u - - 7e-5 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.04 7e-1 36 Oryza sativa Os05g0411400 9633.m03150 - - 2e+0 At1g32290 unknown protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.22947.1.S1_at CA742814 - - 8e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1622672_at CB969551 hypothetical protein LOC100244053 - 4e+0 At3g10730 sad1/unc-84-like 2 family protein C.G. S.X.
0.03 6e-1 34 Zea mays Zm.8133.1.S1_at BM073040 - - 6e+0 At3g52160 KCS15 (3-KETOACYL-COA SYNTHASE 15) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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