CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.157395.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 PtpAffx.157395.1.S1_s_at CK102655 hypothetical protein - 2e-12 At5g13860 ELC-Like (ELCH-like) S.X. H.G.
0.55 82.2 PtpAffx.221137.1.S1_at pmrna37769 hypothetical protein - 6e-109 At1g47550 unknown protein S.X. H.G.
0.30 52.0 PtpAffx.100628.1.S1_s_at CF232037 hypothetical protein - 2e+0 At2g38350 unknown protein S.X. H.G.
0.25 43.6 PtpAffx.10658.1.S1_at DN500790 - - 6e-4 At1g07705 transcription regulator S.X. H.G.
0.18 30.8 PtpAffx.126112.1.S1_s_at BP923608 hypothetical protein - 3e-109 At5g11490 adaptin family protein S.X. H.G.
0.15 25.3 PtpAffx.144041.1.S1_s_at CX175818 hypothetical protein - 9e-14 At3g26370 unknown protein S.X. H.G.
0.13 21.6 Ptp.7424.1.S1_at BU861469 hypothetical protein - 7e-52 At1g12840 DET3 (DE-ETIOLATED 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.0 92.9 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7 91.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 0 1118 PtpAffx.200109.1.S1_at pmrna194 hypothetical protein - 2e-16 At5g13860 ELC-Like (ELCH-like) C.G. S.X.
0.20 8e-93 341 Ptp.1914.1.A1_at CV258264 hypothetical protein - 1e-4 At3g12400 ELC C.G. S.X.
0.26 8e-93 341 Ptp.1914.2.A1_a_at CV258126 hypothetical protein - 2e-7 At5g13860 ELC-Like (ELCH-like) C.G. S.X.
0.20 8e-93 341 Ptp.1914.1.A1_s_at CV258264 hypothetical protein - 1e-4 At3g12400 ELC C.G. S.X.
0.02 2e-1 38 PtpAffx.74405.1.S1_at CF233474 hypothetical protein - 2e-11 At5g12120 ubiquitin-associated (UBA)/TS-N domain-containing protein C.G. S.X.
0.02 2e-1 38 PtpAffx.50541.1.A1_at CV241742 type-b response regulator /// type-b response regulator - 1e-11 At2g01760 ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) C.G. S.X.
0.03 6e-1 36 PtpAffx.211508.1.S1_at pmrna22549 hypothetical protein - 4e-9 At1g01840 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.210526.1.S1_s_at pmrna20640 calcium dependent protein kinase 10 /// calcium dependent protein kinase 28 - 2e-149 At1g74740 CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) C.G. S.X.
0.03 6e-1 36 PtpAffx.208108.1.S1_at pmrna16107 hypothetical protein - 1e+0 At1g44740 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-12 73 Arabidopsis thaliana At5g13860 831232 ELC-Like (ELCH-like) F:small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, protein transport, post-translational protein modification;C:ESCRT I complex;MFOP - - - C.G. S.X.
0.16 3e-12 73 Glycine max GmaAffx.2757.1.A1_at BU545540 - - 8e-18 At5g13860 ELC-Like (ELCH-like) C.G. S.X.
0.02 2e-1 36 Hordeum vulgare HV_CEb0020D23r2_at HV_CEb0020D23r2 - - 7e-2 At4g23432 unknown protein C.G. S.X.
0.05 6e-2 40 Oryza sativa Os02g0833300 AK069209.1 - Tumour susceptibility gene 101 family protein 2e-1 At4g30980 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.77899.1.S1_at CA741009 - - 4e+0 At5g19340 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1615135_at CD797887 - - 1e+1 At5g41992 CPuORF58 (Conserved peptide upstream open reading frame 58) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.10460.1.S1_at BQ485886 - - 9e-1 At1g58470 ATRBP1 (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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