CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.156340.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.156340.1.S1_at CX657667 hypothetical protein - 1e+0 At2g26520 unknown protein S.X. H.G.
0.80 96.0 PtpAffx.221308.1.S1_at pmrna38101 hypothetical protein - 1e-21 At1g72000 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative S.X. H.G.
0.61 87.0 PtpAffx.10087.1.A1_at CV259549 hypothetical protein - 1e-13 At2g36310 URH1 (URIDINE-RIBOHYDROLASE 1) S.X. H.G.
0.50 78.6 PtpAffx.5844.1.S1_at CX174548 hypothetical protein - 9e-5 At1g68680 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.159657.1.A1_at CV264120 hypothetical protein - 4e-35 At5g26600 catalytic/ pyridoxal phosphate binding S.X. H.G.
0.35 59.7 PtpAffx.111048.1.S1_at BU883776 hypothetical protein - 2e-94 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 7e-80 297 Ptp.4949.1.S1_at CV245114 hypothetical protein - 2e-7 At2g30360 SIP4 (SOS3-INTERACTING PROTEIN 4) C.G. S.X.
0.44 5e-53 208 PtpAffx.27927.1.S1_s_at CV247776 hypothetical protein - 1e+0 At2g26520 unknown protein C.G. S.X.
0.03 4e-1 36 PtpAffx.32961.1.S1_at CK103930 hypothetical protein - 9e-2 At5g39030 protein kinase family protein C.G. S.X.
0.03 4e-1 36 PtpAffx.215026.1.S1_s_at pmrna28973 hypothetical protein - 4e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) C.G. S.X.
0.02 4e-1 36 PtpAffx.203511.1.S1_s_at pmrna6982 hypothetical protein - 6e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) C.G. S.X.
0.02 4e-1 36 PtpAffx.203511.1.S1_at pmrna6982 hypothetical protein - 6e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) C.G. S.X.
0.02 4e-1 36 Ptp.4572.1.S1_at BU813363 hypothetical protein - 4e-20 At5g26742 emb1138 (embryo defective 1138) C.G. S.X.
0.02 2e+0 34 PtpAffx.987.4.S1_a_at AJ771251 hypothetical protein - 3e-2 At1g33840 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.987.3.S1_at CA825970 hypothetical protein - 3e-2 At1g33840 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g26520 817193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB - - - C.G. S.X.
0.03 6e+0 32 Glycine max GmaAffx.64885.1.S1_at BQ081653 - - 5e-2 At1g53010 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HVSMEa0017I09r2_s_at HVSMEa0017I09r2 - - 3e+0 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.02 2e+0 34 Oryza sativa Os12g0626100 AK059924.1 - ARM repeat fold domain containing protein 3e-6 At3g58180 PBS lyase HEAT-like repeat-containing protein C.G. S.X.
0.03 2e+1 30 Triticum aestivum TaAffx.85091.1.S1_at CA625688 - - 2e-14 At2g04630 NRPB6B C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1614980_at CF213518 hypothetical protein LOC100247199 - 8e-8 At4g24220 VEP1 (VEIN PATTERNING 1) C.G. S.X.
0.03 5e-1 34 Zea mays Zm.19098.1.A1_at CO519657 hypothetical protein LOC100191312 - 4e+0 At1g21960 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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