Gene omics information

Query gene ID	PtpAffx.156315.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.156315.1.S1_at	CN550016	hypothetical protein	-	5e-57	At4g00570	malate oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.87935.1.S1_at	BU837659	f-box family protein	-	3e-24	At3g26810	AFB2 (AUXIN SIGNALING F-BOX 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.85649.1.S1_at	BU836231	-	-	7e-27	At4g17050	UGLYAH (UREIDOGLYCINE AMINOHYDROLASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.132851.1.S1_at	BU834460	hypothetical protein	-	5e-31	At5g48220	indole-3-glycerol phosphate synthase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.211469.1.S1_at	pmrna22477	hypothetical protein	-	3e-1	At2g02390	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	Ptp.3086.1.S1_s_at	BU832807	hypothetical protein	-	4e-47	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.137439.1.S1_s_at	DN499918	hypothetical protein	-	7e-24	At1g64990	GTG1 (GPCR-TYPE G PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.11592.1.A1_s_at	CV243263	-	-	2e-12	At5g56940	ribosomal protein S16 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	93.5	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	9e-78	291	Ptp.667.1.S1_at	CV240683	hypothetical protein	-	1e-44	At4g00570	malate oxidoreductase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-8	59	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-8	59	PtpAffx.149909.1.S1_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-2	40	PtpAffx.207238.1.S1_s_at	pmrna14347	hypothetical protein	-	0	At1g56070	LOS1	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-2	40	PtpAffx.206712.1.S1_at	pmrna13321	hypothetical protein	-	7e-122	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.203422.1.S1_at	pmrna6819	hypothetical protein	-	5e-9	At5g37380	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.203422.1.S1_s_at	pmrna6819	hypothetical protein	-	5e-9	At5g37380	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.224721.1.S1_s_at	pmrna43533	hypothetical protein	-	1e-6	At1g11330	S-locus lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.224721.1.S1_at	pmrna43533	hypothetical protein	-	1e-6	At1g11330	S-locus lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	5e-57	222	Arabidopsis thaliana	At4g00570	828222	malate oxidoreductase, putative	F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:oxidation reduction, malate metabolic process, metabolic process;C:mitochondrion, chloroplast;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	3e-13	77	Glycine max	GmaAffx.80834.1.S1_at	BE352637	-	-	9e-10	At4g00570	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.22	3e-38	159	Hordeum vulgare	Contig5493_at	Contig5493	-	-	8e-14	At4g00570	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.29	1e-37	159	Oryza sativa	Os.9251.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	1e-23	111	Triticum aestivum	Ta.387.1.S1_a_at	BG905614	-	-	5e-12	At4g00570	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.07	2e-4	46	Vitis vinifera	1621510_at	CF405481	-	-	9e-29	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.17	1e-31	137	Zea mays	Zm.5818.1.A1_at	AY105653.1	-	-	4e-7	At4g00570	malate oxidoreductase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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