Gene omics information

Query gene ID	PtpAffx.154543.1.A1_a_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.154543.1.A1_a_at	CV268890	-	-	5e-24	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.66	88.7	PtpAffx.78476.1.A1_at	DN492751	hypothetical protein	-	1e-4	At2g03690	coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.7182.3.A1_at	CV253214	-	-	6e-3	At1g79390	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.249.93.S1_x_at	BP934988	hypothetical protein	-	0	At5g13490	AAC2 (ADP/ATP carrier 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.2347.1.A1_x_at	CV280648	hypothetical protein	-	1e-140	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.153669.1.A1_s_at	CV247741	hypothetical protein	-	1e-12	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.49	75.7	Ptp.2347.1.A1_at	CV280648	hypothetical protein	-	1e-140	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.7571.1.S1_s_at	CK092545	hypothetical protein	-	4e+0	At5g55131	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.249.93.S1_at	BP934988	hypothetical protein	-	0	At5g13490	AAC2 (ADP/ATP carrier 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.49746.1.A1_at	CV226295	hypothetical protein	-	4e-57	At1g48790	mov34 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	99.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
11.6	99.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.7	98.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.0	98.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.8	98.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	0	674	Ptp.7142.1.S1_at	CF231149	hypothetical protein	-	2e-37	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.33	7e-138	492	PtpAffx.154543.2.A1_at	CV262303	hypothetical protein	-	1e-9	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	1e-77	291	Ptp.2922.1.S1_at	CV269955	hypothetical protein	-	5e-16	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-2	40	PtpAffx.209399.1.S1_x_at	pmrna18617	hypothetical protein	-	7e-27	At2g39220	PLP6 (PATATIN-LIKE PROTEIN 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-2	40	PtpAffx.209399.1.S1_at	pmrna18617	hypothetical protein	-	7e-27	At2g39220	PLP6 (PATATIN-LIKE PROTEIN 6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	PtpAffx.77850.1.A1_at	CV257351	-	-	4e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.249.389.A1_at	CV276737	-	-	1e-14	At4g26370	antitermination NusB domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.201097.1.S1_at	pmrna2166	hypothetical protein	-	1e-4	At5g56140	KH domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.73987.1.A1_at	DN487699	-	-	7e+0	At1g56555	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	5e-24	113	Arabidopsis thaliana	At4g34490	829600	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	CYCLASE ASSOCIATED PROTEIN	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	6e-15	83	Glycine max	GmaAffx.67775.2.S1_at	BE802463	-	-	4e-27	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.06	4e-4	46	Hordeum vulgare	Contig7594_at	Contig7594	-	-	4e-9	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.12	2e-6	56	Oryza sativa	Os03g0722600	9631.m05008	-	CAP protein family protein	2e-17	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-3	46	Triticum aestivum	Ta.23196.1.S1_x_at	CD452618	-	-	3e-4	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.13	6e-27	121	Vitis vinifera	1608923_at	BQ793918	hypothetical protein LOC100262440	-	3e-7	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.06	4e-10	65	Zea mays	Zm.4990.1.A1_at	AI586885	hypothetical protein LOC100279338	-	6e-6	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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