CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.153695.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.153695.1.A1_at CV246282 - - 2e+0 At2g32020 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
0.27 47.1 Ptp.1354.1.A1_at CK093826 - - 5e-13 At1g29200 unknown protein S.X. H.G.
0.27 47.1 PtpAffx.222525.1.S1_at pmrna40023 hypothetical protein - 5e+0 At3g56210 binding S.X. H.G.
0.27 47.1 PtpAffx.222687.1.S1_at pmrna40248 hypothetical protein - 6e-29 At3g04610 FLK (flowering locus KH domain) S.X. H.G.
0.16 26.9 Ptp.2849.2.A1_at DN484673 - - 6e+0 At3g61450 SYP73 (SYNTAXIN OF PLANTS 73) S.X. H.G.
0.14 23.5 PtpAffx.213650.1.S1_at pmrna26660 hypothetical protein - 8e-2 At1g08480 unknown protein S.X. H.G.
0.11 18.1 PtpAffx.147546.1.A1_at CV233793 - - 2e+0 At3g59400 GUN4 S.X. H.G.
0.10 16.3 PtpAffx.213855.1.S1_at pmrna27029 hypothetical protein - 3e-1 At5g52070 agenet domain-containing protein S.X. H.G.
0.08 12.9 PtpAffx.1601.14.S1_at CV239097 - - 1e+1 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) S.X. H.G.
0.07 11.6 PtpAffx.203463.1.S1_at pmrna6897 autoinhibited H+ ATPase - 1e-44 At3g42640 AHA8 (Arabidopsis H(+)-ATPase 8) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.6 99.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.5 98.6 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.8 98.4 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.4 98.2 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.1 97.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 3e-43 174 PtpAffx.249.73.A1_s_at CV247388 hypothetical protein - 1e-10 At1g74670 gibberellin-responsive protein, putative C.G. S.X.
0.42 3e-43 174 PtpAffx.249.73.A1_at CV247388 hypothetical protein - 1e-10 At1g74670 gibberellin-responsive protein, putative C.G. S.X.
0.42 8e-38 157 Ptp.2013.1.S1_at CV252156 - - 6e-3 At5g15230 GASA4 (GAST1 PROTEIN HOMOLOG 4) C.G. S.X.
0.04 5e-2 38 PtpAffx.99162.1.S1_at CV279989 hypothetical protein - 1e+0 At2g17870 cold-shock DNA-binding family protein C.G. S.X.
0.03 5e-2 38 PtpAffx.983.1.A1_at CX172753 hypothetical protein - 5e-10 At5g64180 unknown protein C.G. S.X.
0.02 5e-2 38 PtpAffx.9731.1.S1_at CV255821 hypothetical protein - 1e+1 At5g44582 unknown protein C.G. S.X.
0.01 5e-2 38 PtpAffx.9792.1.S1_s_at BP930774 hypothetical protein - 7e-24 At1g49760 PAB8 (POLY(A) BINDING PROTEIN 8) C.G. S.X.
0.04 5e-2 38 PtpAffx.97498.1.S1_at CV246186 - - 8e-2 At4g09890 unknown protein C.G. S.X.
0.03 5e-2 38 PtpAffx.95744.1.A1_at CV238553 - - 1e-41 At3g55280 RPL23AB (RIBOSOMAL PROTEIN L23AB) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 32 Arabidopsis thaliana At2g32020 817762 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:response to abscisic acid stimulus, metabolic process;C:cellular_component unknown;BOFPAVM - - - C.G. S.X.
0.07 8e-1 34 Glycine max HgAffx.22992.1.S1_at BF014857 - - 2e+0 At1g43330 myb family protein-related C.G. S.X.
0.04 4e+0 30 Hordeum vulgare Contig16772_at Contig16772 - - 3e-1 At3g19220 SCO2 (SNOWY COTYLEDON 2) C.G. S.X.
0.04 1e+0 34 Oryza sativa Os.54434.1.S1_at - - - 0 C.G. S.X.
0.05 2e+0 32 Triticum aestivum TaAffx.9215.1.S1_at CA607381 - - 1e+1 At5g66320 zinc finger (GATA type) family protein C.G. S.X.
0.07 3e+0 30 Vitis vinifera 1617234_at CF202500.1 - - 4e+0 At5g45890 SAG12 (SENESCENCE-ASSOCIATED GENE 12) C.G. S.X.
0.04 9e-1 32 Zea mays Zm.9583.1.A1_at CB351275 - - 1e+0 At4g13170 60S ribosomal protein L13A (RPL13aC) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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