CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.153422.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.153422.1.A1_at CV257794 - - 2e-1 At3g22240 unknown protein S.X. H.G.
0.73 93.6 Ptp.3031.2.A1_at DN484744 - - 4e+0 At3g05500 rubber elongation factor (REF) family protein S.X. H.G.
0.57 84.2 PtpAffx.208375.1.S1_at pmrna16658 cytochrome P450 - 1e-2 At5g10600 CYP81K2 S.X. H.G.
0.40 67.0 PtpAffx.205330.1.S1_s_at pmrna10557 hypothetical protein - 9e-2 At4g37150 MES9 (METHYL ESTERASE 9) S.X. H.G.
0.35 59.7 PtpAffx.221860.1.S1_s_at pmrna38953 cytochrome P450 /// cytochrome P450 - 3e-3 At4g37430 CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2) S.X. H.G.
0.18 30.8 Ptp.7601.1.S1_s_at BU814226 hypothetical protein - 9e+0 At5g06010 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
69.2 100.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2 89.3 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.2 79.6 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.1 78.0 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.0 76.2 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.0 76.2 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.8 72.0 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
0.8 72.0 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-12 71 PtpAffx.218375.1.S1_at pmrna33969 - - 3e-1 At4g29470 phospholipase A2, putative C.G. S.X.
0.14 6e-12 71 PtpAffx.218375.1.S1_x_at pmrna33969 hypothetical protein - 3e-1 At4g29470 phospholipase A2, putative C.G. S.X.
0.11 1e-10 67 PtpAffx.953.2.A1_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.11 1e-10 67 PtpAffx.953.2.A1_a_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.11 4e-10 65 PtpAffx.218377.1.S1_s_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein C.G. S.X.
0.11 4e-10 65 PtpAffx.218377.1.S1_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein C.G. S.X.
0.10 6e-6 52 PtpAffx.953.3.S1_at CA825166 - - 1e+0 At1g74620 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.07 9e-5 48 PtpAffx.43327.1.A1_at CV273078 hypothetical protein - 1e-3 At3g22240 unknown protein C.G. S.X.
0.13 9e-5 48 PtpAffx.212996.1.S1_s_at pmrna25412 hypothetical protein - 9e-1 At4g09270 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-1 36 Arabidopsis thaliana At3g22240 821794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.10 1e-13 77 Glycine max GmaAffx.90419.1.S1_at CF806144 - - 6e-11 At3g22240 unknown protein C.G. S.X.
0.10 8e-6 50 Hordeum vulgare HT10J17u_at HT10J17u - - 1e-5 At3g22240 unknown protein C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.4905.1.S1_at - - - 0 C.G. S.X.
0.08 7e-2 38 Triticum aestivum Ta.27245.1.S1_s_at CA646215 - - 6e-5 At3g22240 unknown protein C.G. S.X.
0.07 1e-6 52 Vitis vinifera 1613082_at CF205439.1 hypothetical protein LOC100244413 /// hypothetical protein LOC100259788 - 2e-11 At3g22240 unknown protein C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.168.1.S1_a_at AI668216 - - 2e-1 At3g24250 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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