CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.152922.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.152922.1.A1_at CV278271 - - 1e+0 At3g26870 self-incompatibility protein-related S.X. H.G.
0.73 93.6 PtpAffx.212212.1.S1_at pmrna23941 hypothetical protein - 8e-8 At2g23840 HNH endonuclease domain-containing protein S.X. H.G.
0.40 67.0 PtpAffx.1096.1.A1_at CV248392 - - 1e+0 At4g05490 F-box family protein (FBL22) S.X. H.G.
0.36 61.6 Ptp.2219.1.S1_at CV237383 - - 1e-14 At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) S.X. H.G.
0.35 59.7 Ptp.1358.2.A1_at CK092478 - - 2e+0 At1g67740 PSBY S.X. H.G.
0.22 38.3 PtpAffx.454.6.A1_s_at CV282596 hypothetical protein - 2e-8 At2g30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.2 99.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
9.2 98.8 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.8 98.7 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.3 98.5 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5 94.3 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 1e-26 121 PtpAffx.159287.1.A1_at CV279446 hypothetical protein - 3e+0 At5g65320 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.27 2e-22 107 PtpAffx.454.34.A1_at CV266012 hypothetical protein - 2e-8 At2g30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) C.G. S.X.
0.30 1e-16 87 PtpAffx.454.6.A1_s_at CV282596 hypothetical protein - 2e-8 At2g30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) C.G. S.X.
0.30 1e-16 87 PtpAffx.454.6.A1_at CV282596 hypothetical protein - 2e-8 At2g30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) C.G. S.X.
0.03 2e+0 34 PtpAffx.28823.1.S1_at DN500548 hypothetical protein - 1e+0 At2g32130 - C.G. S.X.
0.02 2e+0 34 PtpAffx.218958.1.S1_x_at pmrna34729 hypothetical protein - 7e+0 At5g65260 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.213635.1.S1_at pmrna26635 hypothetical protein - 1e-104 At3g51820 G4 C.G. S.X.
0.02 7e+0 32 PtpAffx.90645.1.A1_a_at CV243755 hypothetical protein - 6e-16 At4g17180 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 7e+0 32 PtpAffx.88104.1.A1_at CV282491 - - 1e-4 At5g18600 glutaredoxin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At3g26870 822303 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.64878.1.S1_at BQ080133 - - 1e+1 At5g57500 transferase, transferring glycosyl groups C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HZ56G07r_s_at HZ56G07r - - 2e+0 At3g01030 nucleic acid binding / transcription factor/ zinc ion binding C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.31298.1.S1_at - - - 0 C.G. S.X.
0.03 9e-2 38 Triticum aestivum Ta.18652.1.S1_at CA640105 - - 9e-1 At5g64040 PSAN C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1612085_at CF413799 hypothetical protein LOC100265702 - 2e+0 At2g41945 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.7657.1.A1_at BM338496 hypothetical protein LOC100278001 - 1e+0 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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