Gene omics information

Query gene ID PtpAffx.152922.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.152922.1.A1_atCV278271--1e+0At3g26870self-incompatibility protein-relatedS.X.H.G.
0.7393.6PtpAffx.212212.1.S1_atpmrna23941hypothetical protein-8e-8At2g23840HNH endonuclease domain-containing proteinS.X.H.G.
0.4067.0PtpAffx.1096.1.A1_atCV248392--1e+0At4g05490F-box family protein (FBL22)S.X.H.G.
0.3661.6Ptp.2219.1.S1_atCV237383--1e-14At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)S.X.H.G.
0.3559.7Ptp.1358.2.A1_atCK092478--2e+0At1g67740PSBYS.X.H.G.
0.2238.3PtpAffx.454.6.A1_s_atCV282596hypothetical protein-2e-8At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.299.0GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
9.298.8GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
8.898.7GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.398.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.195.5GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.095.3GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.794.7GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.694.5GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.594.3GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.494.0GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.431e-26121PtpAffx.159287.1.A1_atCV279446hypothetical protein-3e+0At5g65320basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.272e-22107PtpAffx.454.34.A1_atCV266012hypothetical protein-2e-8At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)C.G.S.X.
0.301e-1687PtpAffx.454.6.A1_s_atCV282596hypothetical protein-2e-8At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)C.G.S.X.
0.301e-1687PtpAffx.454.6.A1_atCV282596hypothetical protein-2e-8At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)C.G.S.X.
0.032e+034PtpAffx.28823.1.S1_atDN500548hypothetical protein-1e+0At2g32130-C.G.S.X.
0.022e+034PtpAffx.218958.1.S1_x_atpmrna34729hypothetical protein-7e+0At5g65260polyadenylate-binding protein family protein / PABP family proteinC.G.S.X.
0.022e+034PtpAffx.213635.1.S1_atpmrna26635hypothetical protein-1e-104At3g51820G4C.G.S.X.
0.027e+032PtpAffx.90645.1.A1_a_atCV243755hypothetical protein-6e-16At4g17180glycosyl hydrolase family 17 proteinC.G.S.X.
0.027e+032PtpAffx.88104.1.A1_atCV282491--1e-4At5g18600glutaredoxin family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e+034Arabidopsis thalianaAt3g26870822303self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P---C.G.S.X.
0.032e+034Glycine maxGmaAffx.64878.1.S1_atBQ080133--1e+1At5g57500transferase, transferring glycosyl groupsC.G.S.X.
0.042e+032Hordeum vulgareHZ56G07r_s_atHZ56G07r--2e+0At3g01030nucleic acid binding / transcription factor/ zinc ion bindingC.G.S.X.
0.033e+034Oryza sativaOsAffx.31298.1.S1_at---0C.G.S.X.
0.039e-238Triticum aestivumTa.18652.1.S1_atCA640105--9e-1At5g64040PSANC.G.S.X.
0.041e-136Vitis vinifera1612085_atCF413799hypothetical protein LOC100265702-2e+0At2g41945unknown proteinC.G.S.X.
0.032e+032Zea maysZm.7657.1.A1_atBM338496hypothetical protein LOC100278001-1e+0At1g5354017.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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