Gene omics information

Query gene ID	PtpAffx.152452.2.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	73.7	PtpAffx.152452.2.A1_a_at	CV269086	hypothetical protein	-	4e-1	At1g53903	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.209290.1.S1_at	pmrna18360	hypothetical protein	-	2e-1	At3g47080	binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.16351.1.S1_at	DN488804	AP2/ERF domain-containing transcription factor	-	3e-24	At1g64380	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.129726.1.S1_a_at	CV263013	hypothetical protein	-	2e-34	At1g19140	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.223273.1.S1_x_at	pmrna41187	Cl-channel clc-7	-	3e-78	At5g49890	CLC-C (CHLORIDE CHANNEL C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.223273.1.S1_at	pmrna41187	Cl-channel clc-7	-	3e-78	At5g49890	CLC-C (CHLORIDE CHANNEL C)	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.2	99.6	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
13.5	99.4	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-133	476	Ptp.5030.1.A1_x_at	DN485279	hypothetical protein	-	4e-64	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	2e-133	476	Ptp.5030.1.A1_at	DN485279	hypothetical protein	-	4e-64	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	1e-60	234	PtpAffx.152452.3.S1_a_at	CV261699	-	-	2e+0	At5g49120	senescence-associated protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-20	101	Ptp.7869.1.S1_at	DN500509	-	-	2e+0	At4g19850	ATPP2-A2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	Ptp.6220.2.A1_s_at	CV263023	-	-	3e-5	At1g22160	senescence-associated protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	Ptp.6220.1.A1_a_at	CV263190	hypothetical protein	-	3e-4	At1g22160	senescence-associated protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	Ptp.6220.1.A1_at	CV263190	hypothetical protein	-	3e-4	At1g22160	senescence-associated protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.221939.1.S1_at	pmrna39058	hypothetical protein	-	1e-1	At1g57906	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.116872.1.S1_at	CF232366	-	-	5e+0	At2g30115	-	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-1	36	Arabidopsis thaliana	At1g53903	6241094	-	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-20	101	Glycine max	GmaAffx.12706.1.A1_at	BE657524	-	-	3e+0	At5g10730	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please select
0.05	5e-2	38	Hordeum vulgare	Contig12863_at	Contig12863	-	-	5e-17	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os05g0317200	AK100521.1	-	AMP-dependent synthetase and ligase domaincontaining protein	2e-8	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-4	46	Triticum aestivum	Ta.7413.1.S1_at	BT008939.1	-	-	5e-31	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	C.G.	S.X.	Please select
0.34	5e-35	147	Vitis vinifera	1608793_at	BQ792820	hypothetical protein LOC100265978	-	9e-5	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.455.1.A1_at	AI677194	hypothetical protein LOC100194007	-	3e+0	At1g44085	glycine-rich protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage