Gene omics information

Query gene ID PtpAffx.151954.3.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.151954.3.S1_atCX186472hypothetical protein-7e-33At3g58180PBS lyase HEAT-like repeat-containing proteinS.X.H.G.
0.7794.9PtpAffx.151954.1.S1_atCV259016hypothetical protein-6e-26At3g58180PBS lyase HEAT-like repeat-containing proteinS.X.H.G.
0.7794.9PtpAffx.151954.1.S1_a_atCV259016hypothetical protein-6e-26At3g58180PBS lyase HEAT-like repeat-containing proteinS.X.H.G.
0.5784.2PtpAffx.203390.1.S1_atpmrna6745hypothetical protein-3e-20At2g33550gt-2-relatedS.X.H.G.
0.5582.2Ptp.3530.1.S1_atCV262873hypothetical protein-1e-1At5g25280serine-rich protein-relatedS.X.H.G.
0.4268.6PtpAffx.13452.1.S1_atCV235856hypothetical protein-2e-6At5g63910FCLY (FARNESYLCYSTEINE LYASE)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.199.6GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.395.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.894.9GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.289.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
2.088.0GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
2.088.0GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.886.4GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001237PtpAffx.151954.3.S1_a_atCX186472hypothetical protein-7e-33At3g58180PBS lyase HEAT-like repeat-containing proteinC.G.S.X.
0.480642PtpAffx.151954.1.S1_atCV259016hypothetical protein-6e-26At3g58180PBS lyase HEAT-like repeat-containing proteinC.G.S.X.
0.480642PtpAffx.151954.1.S1_a_atCV259016hypothetical protein-6e-26At3g58180PBS lyase HEAT-like repeat-containing proteinC.G.S.X.
0.021e-138PtpAffx.220910.1.S1_s_atpmrna37385NAC domain protein, IPR003441 /// NAC domain protein, IPR003441-3e+0At3g61610aldose 1-epimerase family proteinC.G.S.X.
0.041e-138PtpAffx.216971.1.S1_atpmrna32056hypothetical protein-2e-1At4g26880stigma-specific Stig1 family proteinC.G.S.X.
0.041e-138PtpAffx.201239.1.S1_s_atpmrna2462hypothetical protein-1e-1At4g26880stigma-specific Stig1 family proteinC.G.S.X.
0.014e-136PtpAffx.211729.1.S1_atpmrna22986hypothetical protein-2e-18At4g02110transcription coactivatorC.G.S.X.
0.032e+034PtpAffx.98957.1.S1_s_atBU811577hypothetical protein-1e-15At3g11560unknown proteinC.G.S.X.
0.022e+034PtpAffx.217474.1.S1_atpmrna32753hypothetical protein-7e+0At3g18295unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.287e-33141Arabidopsis thalianaAt3g58180824987PBS lyase HEAT-like repeat-containing proteinF:lyase activity, binding;P:biological_process unknown;C:phycobilisome;BOMFAP---C.G.S.X.
0.032e+034Glycine maxGmaAffx.72448.1.S1_atBG041710--1e+0At4g13345MEE55 (maternal effect embryo arrest 55)C.G.S.X.
0.036e-134Hordeum vulgareContig19784_atContig19784--2e-4At4g18070unknown proteinC.G.S.X.
0.135e-23109Oryza sativaOs12g0626100AK059924.1-ARM repeat fold domain containing protein3e-6At3g58180PBS lyase HEAT-like repeat-containing proteinC.G.S.X.
0.116e-1891Triticum aestivumTa.2495.1.S1_atBJ297930--7e-7At3g58180PBS lyase HEAT-like repeat-containing proteinC.G.S.X.
0.046e+030Vitis vinifera1611941_atCF201800.1--3e+0At5g53200TRY (TRIPTYCHON)C.G.S.X.
0.028e+030Zea maysZmAffx.1116.1.S1_atAI670638--5e+0At5g55570unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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