CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.151954.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.151954.1.S1_a_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
0.77 94.9 PtpAffx.151954.3.S1_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
0.67 91.1 PtpAffx.285.1.S1_at CX178284 hypothetical protein - 1e-68 At1g76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative S.X. H.G.
0.53 80.5 PtpAffx.13452.1.S1_at CV235856 hypothetical protein - 2e-6 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) S.X. H.G.
0.50 78.6 PtpAffx.151954.1.S1_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
0.43 69.7 PtpAffx.34173.1.S1_at CV227862 hypothetical protein - 2e+0 At3g15358 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.6 99.7 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.3 99.2 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.1 99.1 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.8 98.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.8 98.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.3 98.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.6 97.2 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.1 78.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.9 74.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 2478 PtpAffx.151954.1.S1_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein C.G. S.X.
0.48 0 642 PtpAffx.151954.3.S1_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein C.G. S.X.
0.48 0 642 PtpAffx.151954.3.S1_a_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein C.G. S.X.
0.25 4e-68 260 PtpAffx.151954.2.A1_at CV257113 - - 4e-13 At3g58180 PBS lyase HEAT-like repeat-containing protein C.G. S.X.
0.02 2e-1 38 PtpAffx.146896.1.A1_at CV258249 hypothetical protein - 2e-12 At3g58830 haloacid dehalogenase (HAD) superfamily protein C.G. S.X.
0.01 1e+0 36 PtpAffx.211729.1.S1_at pmrna22986 hypothetical protein - 2e-18 At4g02110 transcription coactivator C.G. S.X.
0.01 1e+0 36 PtpAffx.147493.2.A1_at CV243231 hypothetical protein - 3e-8 At1g02070 unknown protein C.G. S.X.
0.01 4e+0 34 PtpAffx.225138.1.S1_at pmrna44270 - - 6e-2 At2g24210 TPS10 (terpene synthase 10) C.G. S.X.
0.01 4e+0 34 PtpAffx.220910.1.S1_s_at pmrna37385 NAC domain protein, IPR003441 /// NAC domain protein, IPR003441 - 3e+0 At3g61610 aldose 1-epimerase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 6e-26 119 Arabidopsis thaliana At3g58180 824987 PBS lyase HEAT-like repeat-containing protein F:lyase activity, binding;P:biological_process unknown;C:phycobilisome;BOMFAP - - - C.G. S.X.
0.02 1e+0 36 Glycine max Gma.5108.1.S1_at CA938409 - - 9e-1 At2g34320 nucleic acid binding C.G. S.X.
0.07 2e-8 59 Hordeum vulgare EBma01_SQ002_F17_at EBma01_SQ002_F17 - - 1e-9 At3g58180 PBS lyase HEAT-like repeat-containing protein C.G. S.X.
0.25 1e-16 89 Oryza sativa Os12g0626100 AK059924.1 - ARM repeat fold domain containing protein 3e-6 At3g58180 PBS lyase HEAT-like repeat-containing protein C.G. S.X.
0.14 9e-13 75 Triticum aestivum Ta.2495.1.S1_at BJ297930 - - 7e-7 At3g58180 PBS lyase HEAT-like repeat-containing protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1611999_at CD717763 - - 3e-1 At2g45950 ASK20 (ARABIDOPSIS SKP1-LIKE 20) C.G. S.X.
0.14 1e-3 44 Zea mays Zm.19098.1.A1_at CO519657 hypothetical protein LOC100191312 - 4e+0 At1g21960 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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