CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.151469.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.151469.1.S1_at DN494849 hypothetical protein - 7e-34 At2g13650 GONST1 (Golgi Nucleotide Sugar Transporter 1) S.X. H.G.
0.36 61.6 PtpAffx.30368.2.S1_s_at CX657356 hypothetical protein - 2e-3 At3g51730 saposin B domain-containing protein S.X. H.G.
0.15 25.3 PtpAffx.3718.1.A1_at CX167706 hypothetical protein - 6e-31 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein S.X. H.G.
0.09 14.6 PtpAffx.217108.1.S1_at pmrna32250 hypothetical protein - 8e-13 At5g03330 OTU-like cysteine protease family protein S.X. H.G.
0.09 14.6 PtpAffx.210556.1.S1_s_at pmrna20710 hypothetical protein - 5e-1 At3g04630 WDL1 S.X. H.G.
0.07 11.6 PtpAffx.13718.1.S1_at BU896942 hypothetical protein - 7e-1 At5g43100 aspartyl protease family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.5 98.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-1 36 PtpAffx.204918.1.S1_at pmrna9724 hypothetical protein - 6e-19 At1g07290 nucleotide-sugar transmembrane transporter C.G. S.X.
0.02 6e-1 36 PtpAffx.112255.1.S1_at BU836900 hypothetical protein - 1e+0 At1g32580 plastid developmental protein DAG, putative C.G. S.X.
0.01 2e+0 34 PtpAffx.570.1.S1_at DN483943 hypothetical protein - 5e-24 At3g55980 SZF1 (SALT-INDUCIBLE ZINC FINGER 1) C.G. S.X.
0.02 2e+0 34 PtpAffx.41908.1.S1_at DN493129 hypothetical protein - 4e-1 At3g52550 - C.G. S.X.
0.02 2e+0 34 PtpAffx.224265.1.S1_s_at pmrna42669 hypothetical protein - 5e-4 At2g26560 PLA2A (PHOSPHOLIPASE A 2A) C.G. S.X.
0.02 2e+0 34 PtpAffx.224265.1.S1_at pmrna42669 hypothetical protein - 5e-4 At2g26560 PLA2A (PHOSPHOLIPASE A 2A) C.G. S.X.
0.01 2e+0 34 PtpAffx.223257.1.S1_at pmrna41160 hypothetical protein - 8e-56 At1g09830 phosphoribosylamine--glycine ligase (PUR2) C.G. S.X.
0.03 2e+0 34 PtpAffx.222700.1.S1_at pmrna40273 hypothetical protein - 5e-2 At4g23780 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.218168.1.S1_x_at pmrna33706 cc-nbs-lrr resistance protein - 6e-3 At5g53000 TAP46 (2A phosphatase associated protein of 46 kD) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 7e-34 145 Arabidopsis thaliana At2g13650 815850 GONST1 (Golgi Nucleotide Sugar Transporter 1) GDP-mannose transporter - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.68334.1.A1_at BU548928 - - 9e-1 At5g45890 SAG12 (SENESCENCE-ASSOCIATED GENE 12) C.G. S.X.
0.02 1e+1 30 Hordeum vulgare HVSMEi0009N09r2_at HVSMEi0009N09r2 - - 6e-5 At1g05840 aspartyl protease family protein C.G. S.X.
0.08 2e-11 71 Oryza sativa Os08g0107400 AK100839.1 - GDP-mannose transporter 3e-13 At2g13650 GONST1 (Golgi Nucleotide Sugar Transporter 1) C.G. S.X.
0.07 2e-3 44 Triticum aestivum TaAffx.9309.1.S1_at CA603489 - - 1e-6 At2g13650 GONST1 (Golgi Nucleotide Sugar Transporter 1) C.G. S.X.
0.05 1e-4 46 Vitis vinifera 1609106_at CD006725 - - 6e-6 At1g07290 nucleotide-sugar transmembrane transporter C.G. S.X.
0.03 3e+0 32 Zea mays Zm.8025.1.A1_at AY104994.1 Hypothetical protein LOC100217218 - 2e+0 At3g08630 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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