Gene omics information

Query gene ID	PtpAffx.15088.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.15088.1.S1_at	CF936886	hypothetical protein	-	7e-3	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.3640.1.S1_at	BU895250	hypothetical protein	-	7e-2	At4g09890	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.7446.1.S1_at	BU814736	hypothetical protein	-	2e+0	At3g21710	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.149893.1.S1_s_at	DN486606	hypothetical protein	-	1e-8	At3g12950	catalytic	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.5913.1.S1_s_at	CV244093	AP2/ERF domain-containing transcription factor	-	2e-15	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.72354.1.S1_at	BU889551	hypothetical protein	-	3e+0	At4g14104	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.4	98.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.7	98.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.4	98.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.4	98.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	9e-74	278	PtpAffx.200895.1.S1_at	pmrna1759	hypothetical protein	-	1e-12	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-2	40	PtpAffx.106163.1.A1_at	CV240193	hypothetical protein	-	4e-1	At3g18800	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.48835.1.S1_at	CV260897	hypothetical protein	-	1e-7	At3g18580	single-strand-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.205309.1.S1_at	pmrna10524	hypothetical protein	-	3e-1	At1g53035	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.81893.1.A1_at	CV268920	AP2/ERF domain-containing transcription factor	-	2e-6	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.44545.1.A1_at	CV228040	f-box family protein	-	2e+0	At2g33030	AtRLP25 (Receptor Like Protein 25)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.212076.1.S1_at	pmrna23700	hypothetical protein	-	6e-64	At4g08180	ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.208979.1.S1_at	pmrna17792	hypothetical protein	-	3e-9	At1g68800	TCP12 (TCP DOMAIN PROTEIN 12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.206183.1.S1_at	pmrna12275	multidrug/pheromone exporter, MDR family, ABC transporter family	-	1e-4	At2g47000	ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-3	42	Arabidopsis thaliana	At5g12330	831108	LRP1 (LATERAL ROOT PRIMORDIUM 1)	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.92737.1.S1_x_at	CF808462	-	-	3e-16	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	rbaal35m01_s_at	rbaal35m01	-	-	2e-8	At3g09550	protein binding	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os01g0839000	NM_190518.1	-	-	3e-1	At2g26120	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Triticum aestivum	TaAffx.6283.1.S1_at	CA688902	-	-	3e+0	At2g05635	ATP binding / ATP-dependent DNA helicase/ DNA binding	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1613441_s_at	CB973258	hypothetical protein LOC100250052	-	2e-5	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.383.1.A1_at	AI673962	-	-	2e-1	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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